Stip018312.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392430.1:763388-768498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.062 3.6 8.5 0.3 8 23 127 142 126 142 0.93 2 19 0.00043 0.025 15.3 1.7 1 23 148 171 148 171 0.95 3 19 4.5e-06 0.00026 21.5 0.9 1 23 177 199 177 199 0.98 4 19 2.5e-05 0.0015 19.2 1.5 1 23 205 227 205 227 0.91 5 19 4.3e-05 0.0025 18.4 4.0 1 23 289 312 289 312 0.96 6 19 0.0004 0.023 15.4 4.0 2 23 320 342 319 342 0.94 7 19 0.04 2.3 9.1 6.5 3 23 350 368 348 368 0.94 8 19 7.9e-06 0.00046 20.7 3.1 2 23 376 398 375 398 0.95 9 19 8.8e-06 0.00051 20.6 1.4 2 23 407 429 406 429 0.93 10 19 0.0047 0.27 12.0 2.4 1 23 437 460 437 460 0.94 11 19 0.041 2.4 9.1 2.4 2 23 469 491 468 491 0.95 12 19 6.4e-05 0.0037 17.9 1.8 1 23 500 523 500 523 0.93 13 19 0.00011 0.0065 17.1 3.1 1 23 531 554 531 554 0.96 14 19 9.4e-05 0.0055 17.4 2.4 3 23 564 585 564 585 0.96 15 19 0.00096 0.056 14.2 1.3 1 23 593 616 593 616 0.93 16 19 1.1e-05 0.00061 20.4 2.3 2 23 624 647 623 647 0.91 17 19 0.00046 0.027 15.2 4.2 2 23 654 675 654 675 0.96 18 19 5.1e-06 0.00029 21.4 1.6 1 23 683 706 683 706 0.91 19 19 4.5e-05 0.0026 18.4 4.4 3 23 715 736 714 736 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCAACACAAACACCCTTATGCAGATGTTGTCACAAAAATGGTGTATTCAAGAGTCTATTTTCAGACTATATCTACAACGAGCATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAGCTTGACAAAATATCTACAATATGCGATGAGTGTATTGAAAAACTACGTATATCAACAGATTTGAAGATTGCCTTTGGGAAAATTACAAAAGAAGAAACGTTAACGGAAGTAGACGTCAAGGTTCAAAAAGAAGAGGTCGCCAATGAGGAACACGGAGACACAGGCATAATTAGCGTATTAGATGAAGAGTCCAATGAAGATGTCAAAATTGAAGAGAGCAGAAAGGAAACATATAAATCTAGTATAAGTTTGAAGGCTCATATGAAAACTCATAAGGACGTAAAACCGCACGAGTGCCAAGAGTGCGGCGAGAAATTCAAAGTAAAAATAAGCTTATTGAGGCATAGTCAAAAAATGCACACGAGTGTAAAAAAGTACAGTTGCCAGTATTGTGATAAGACATTTATGACGAAAAGTAAATTGGTTGCACATGAAATGATACACAAGATTGTAAAAACGTATAAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGACGCTTTGTTAAGTCATGATAAAGTGCATGAGAAACAAGAGCCTTACAATCATAACCTGCCTGAAAATAGATTAAAAAGAAAAGAAAATGATAATAGACAAATGTTGACGCATGCAGAGATAAATGAGTGTGGTGACATTTCCAAAAAGACAAATAATAACAAACAGACTTTAATAAGGCAAATGTCGGATGTACATTTGGACCAGCCACCATATGAGTGCCAAATTTGCAAGAAGACATTTAAACTGAAGGGTTATTTTCGCAGACACATGTTGCATGGACATTTCATCCAGAAGCCACCCAGTCAGTGTGAAATTTGCAAGAGGACATTTAAATTAAAGCACCATTTAGAACTCCACATGTCGGCTACACATTTGCGCGTTAAGCCAACTCATTGCGAAATTTGCAAAAAGACATTTAAACACTTGCGCAGACACATGAGGTCTATACATTATTCGGGCTACAAGCCTAGTAAGTGCGACATATGTAAGAAATCATTTAAATTGAAGAAGTATTTACAGAAACACATGCGGTTTGTACATTTGGGCTTTAAGCAAAAACCCACTGAGTGCGACATATGCAAGAAAACATTTAAATCCAAGCAAAATGTACGCCGGCACATGATAGGTAGACATTCGAGCTCTGAATTAAAGCCCTTTGAATGCGACATTTGCAAGGCGACATTTAAACACAAGCGGAGTGTACACGACCACATTTCGGCTCTACATTTAGGCTCTAAGCGAACACCCATTGAGTGCGACATATGCAAGAAAAGATTTCAATGCAAGCAGAATATACGCAATCACATGTTGAGTGTACATTCGGCGGGCTCCGATTTAACGCTCTATGAATGCGACACTTGCAAGAAGACATTTAAATACAAACAGGGTTTAAATAAACACAAGTTGGGTATACATCCGGACTCTGATGTAGCGTCCTTTAAATGCGACATATGCGAGAAGACATTTAATTACAAACGGAGTTTACACGACCACACGTTGAGTGTACATTTGGGCCACAGGCCAACGCCCGTAGGATGCGACATTTGCAAAAAGATATATAAATCCAAGGATTATTTACGCAAACACATGTTGCATGTACATTTGAGCTCTAAGCTAACGCCCTATCAATGCAACATATGCAAGATGACATTTAAATACAGACAGAGTGTACAGACCCACAAGTTGGCTGTACATTCGGGCATTGAGCCAAAGATTCAATGCGAAATTTGCAAGAGGACATTTAAATTCCAGAAGTATTTACGTAAACACATGAAGTCTTCTGTACATTTGGAGCCAACGCCCGCTGAGTGTAGTATTTGCAAGAAAACATTCAAAGACAAGAAGTATATACACAAACACATGTCTCTACATTCGAGCTTTAGGCCAACGTTCTTTGAGTGCGACATTTGTGGGAAAATATTTAAACGCAAGATCCATTTATACAACCACATGGTGTTTATGCATTTGGGTAAGAACCCACTCCGTCATTGTGATATTTGCAAGAAGACATTTAAATACAAGCACAGTCTACGCGTCCACATGTCGGTTGTACATTTGGGCATGAAAATAACACGCACTAGAAGAAAAGTTGATAAAAAAGTTGATTAA
- Protein Sequence
- MAATQTPLCRCCHKNGVFKSLFSDYIYNEHEVENYSQMLHATFGILFEPSELDKISTICDECIEKLRISTDLKIAFGKITKEETLTEVDVKVQKEEVANEEHGDTGIISVLDEESNEDVKIEESRKETYKSSISLKAHMKTHKDVKPHECQECGEKFKVKISLLRHSQKMHTSVKKYSCQYCDKTFMTKSKLVAHEMIHKIVKTYKCEKCNKSFRSKDALLSHDKVHEKQEPYNHNLPENRLKRKENDNRQMLTHAEINECGDISKKTNNNKQTLIRQMSDVHLDQPPYECQICKKTFKLKGYFRRHMLHGHFIQKPPSQCEICKRTFKLKHHLELHMSATHLRVKPTHCEICKKTFKHLRRHMRSIHYSGYKPSKCDICKKSFKLKKYLQKHMRFVHLGFKQKPTECDICKKTFKSKQNVRRHMIGRHSSSELKPFECDICKATFKHKRSVHDHISALHLGSKRTPIECDICKKRFQCKQNIRNHMLSVHSAGSDLTLYECDTCKKTFKYKQGLNKHKLGIHPDSDVASFKCDICEKTFNYKRSLHDHTLSVHLGHRPTPVGCDICKKIYKSKDYLRKHMLHVHLSSKLTPYQCNICKMTFKYRQSVQTHKLAVHSGIEPKIQCEICKRTFKFQKYLRKHMKSSVHLEPTPAECSICKKTFKDKKYIHKHMSLHSSFRPTFFECDICGKIFKRKIHLYNHMVFMHLGKNPLRHCDICKKTFKYKHSLRVHMSVVHLGMKITRTRRKVDKKVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -