Stip003354.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392435.1:133351-136796[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.8 3.4e+03 -1.6 1.7 19 25 11 17 5 18 0.88 2 13 6.6 3.3e+03 -1.5 0.0 21 36 89 105 85 106 0.86 3 13 0.014 6.8 7.1 1.5 18 40 228 247 222 249 0.77 4 13 0.012 6.2 7.2 0.8 17 39 263 282 252 287 0.86 5 13 0.72 3.7e+02 1.5 2.0 16 43 290 314 285 315 0.89 6 13 0.025 12 6.2 5.5 5 43 308 343 304 344 0.85 7 13 0.0051 2.6 8.4 2.3 16 43 347 371 345 372 0.80 8 13 0.022 11 6.4 0.4 16 39 375 395 372 400 0.74 9 13 0.025 13 6.2 0.5 18 43 405 427 402 428 0.86 10 13 0.0031 1.6 9.1 2.3 16 43 431 455 427 456 0.86 11 13 0.021 10 6.5 0.5 17 43 460 483 457 484 0.85 12 13 0.00017 0.088 13.1 2.3 16 43 487 511 483 512 0.90 13 13 0.0071 3.6 8.0 1.0 16 39 515 535 513 539 0.77
Sequence Information
- Coding Sequence
- ATGGCTGAAACATTAAACTCAAAACCTTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTTTATTTTCCGACTTCATTAACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACGTTTGGAATCTTATTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAACTACGTATATCAACGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAGTGCTTGTTGGCGAGGGCACTGTCGTGCTCGACTTGACGGGGGCACTGCAGAGACCTCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAGTGACATGGATATAATAAATGAGGGTTCAGACGAAGATTGCAATCAAGAGGTCAAAGTTGAAGACAACGGAAACAAATCTGATGAAACCTGGAGTGAATCTGAAATGTACTTCATAGAAGAAGCGTTAATAGCAGATGACATCAAAGTTGAAACAGAAGAGGTGGTCAACGATGAACACTCTGGAATAAATAAGGTTTTAAATGAAGATGTCAGAAATGAAGACTCAAGTATGAATAAGGTTTTAGATGAAGAGTTCAATGAAGAGCGTGAAATGAAATTAGATGAAATCTTTAATGATGCTGGTGTCAGTTTAAAAAAAGCAAGCGACATACATGAGTATAAATGCAACATTTGCAACACAACTTTCAAACGCAAGGTGACCTTAGAAAATCACATCAGAACTCACGGCGACTTTTATAGTAAAGAGGGTTTGAAATATAAGCCTTTAACTTGTAACGTGTGTGATAAAGCGTTCAAAACGATAAATACTTTAAGCAGACACATGTTGACGCATACTGGAATAAAGTCTTTCCAATGCAGTGTCTGTAGCAAGAGTTTTACACTTAAAAGTTATCTTAATAATCACATGAAGAAAGTCCATACGAGCGAAAGTCCTTACAAATGCGGCACTTGCAAGAAGACATTTAAGTACGCTCAGACTTTAAAGAGGCACATGTCGATTGTACATTTGGGCTTTAAGCTGGACTGCAAAATTTGCAAGAAGATATTAAAATCCAAAGGAAGTTTAAGGAAGCACATGTCAGTTGTACATTCGGGCTTTAAGTTTGACTGCGACATTTGCAAAAAGACATTCAAATCCAAAGGAAGTTTAAGGGAGCACATATCAGCTGTACATTTAGGCATTAAGTTTGACTGCGACATTTGCAAGAAGAGATTTAAATACAAAAAGAGTTTCAGCGAGCACATGTCAGCTGTACATTCGGGCTTAATGTTTGACTGCAAAATTTGCAAAAAGACATTTAAATACAAACAGAGTTTAAGGGAGCACATGTCAGCTGTACATTCGGGCTTAATGTTTGACTGCGACATTTGCAAGAAGAGATTTAAATACAAAAAGAGTTTCAGCGAGCACATGTCAGCTGTACATTCGGGCCTTAAGCTTTATTGCGACATTTGCAAAAAGACATTTAAATACAAAAGTAATTTAAGAGAGCACATGTCGGCTGTACATTTGGGCTTCAAGCTTCACTGTGACATTTGCAAGAAGACATTTAAATACAAAGGAAGTTTAAGCAGGCACATGTCGGCTCTACATTTGGATCTTTAG
- Protein Sequence
- MAETLNSKPFCRCCHKNGDFKCLFSDFINENEIENYSQMLYDTFGILFVPSIDDKIYTICDECIEKLRISTEFKNCVLACKKSACWRGHCRARLDGGTAETSDMKQETSEDEDSDMDIINEGSDEDCNQEVKVEDNGNKSDETWSESEMYFIEEALIADDIKVETEEVVNDEHSGINKVLNEDVRNEDSSMNKVLDEEFNEEREMKLDEIFNDAGVSLKKASDIHEYKCNICNTTFKRKVTLENHIRTHGDFYSKEGLKYKPLTCNVCDKAFKTINTLSRHMLTHTGIKSFQCSVCSKSFTLKSYLNNHMKKVHTSESPYKCGTCKKTFKYAQTLKRHMSIVHLGFKLDCKICKKILKSKGSLRKHMSVVHSGFKFDCDICKKTFKSKGSLREHISAVHLGIKFDCDICKKRFKYKKSFSEHMSAVHSGLMFDCKICKKTFKYKQSLREHMSAVHSGLMFDCDICKKRFKYKKSFSEHMSAVHSGLKLYCDICKKTFKYKSNLREHMSAVHLGFKLHCDICKKTFKYKGSLSRHMSALHLDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388737;
- 90% Identity
- iTF_01388737;
- 80% Identity
- iTF_01388737;