Stip013307.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392426.1:5986009-5986911[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-12 1.3e-09 37.9 0.0 2 37 16 51 15 58 0.93 2 2 2.3 2e+03 -1.1 0.0 14 23 137 146 131 147 0.73
Sequence Information
- Coding Sequence
- ATGGGTAGACGCTACCAAAGAACGTCATGCAGAGCATCGTGGACGGCTGAAGCTCTCGATGAAGCTATGGCGAAGGTCACCAATAAAGAATTAGGAATCAACCAAGCCAGCAGGGAGTATGGCATTCCTAGTCGGACCCTTAGAAGACATCTTACATCGGGCAAAGGTAAAGGGCCATTGGGTAGATGTCCGGAGCTAGGGTTCGAATATGAAAAGAAACTCGATAGCCATATTCAAGCTCTTGAAAAAGTTGGATTTTCTCCTAATAAAGACGACGTTCAGAGTTTGGCTTACGCTTTAGCTGAAAAAATGAATTTGAAACATAGATTTTCACAAGCGAGACAAAAAGCTGGTGATGACTGGTTCTATGCATTTATGCGGCGTAATAAAGAAATAGTATTACGTAAGTCTGAAGGTTTATCTTTAGCCCGTGCTCAAGGAACAAACCGCAAAGATGTTGATGATTATTTTAATATTTTGAAAAATATCCTGATTGAaaacgatttgatggataagccaggtaaaatatacaatgttgacgaaactggaatccaaattaataacaaagccgggagagttttagctaccaaaggagctaaagaagtttataccataacaagtacggaaaagggtgaaaccgttagtgttattgcttgttgcagtgccgaagggcagtttttgcctccagttcttatttttaaaggtaaaaacaaaaaaccagagtttactgaagggttaccacctggatctgaggtatacatgaatcagaagtcgtcatatataaacagcgacttgttctataaatggtttacagagcattttttaccaaagaaaggtacaggtaaagctttgttgcttttggatggtcatggttcacatagcaattcgattgaagccctataa
- Protein Sequence
- MGRRYQRTSCRASWTAEALDEAMAKVTNKELGINQASREYGIPSRTLRRHLTSGKGKGPLGRCPELGFEYEKKLDSHIQALEKVGFSPNKDDVQSLAYALAEKMNLKHRFSQARQKAGDDWFYAFMRRNKEIVLRKSEGLSLARAQGTNRKDVDDYFNILKNILIENDLMDKPGKIYNVDETGIQINNKAGRVLATKGAKEVYTITSTEKGETVSVIACCSAEGQFLPPVLIFKGKNKKPEFTEGLPPGSEVYMNQKSSYINSDLFYKWFTEHFLPKKGTGKALLLLDGHGSHSNSIEAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -