Stip004606.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- lolal
- Assembly
- GCA_947623395.1
- Location
- OX392409.1:12682795-12686297[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-17 7.1e-14 51.5 0.0 1 42 337 379 337 382 0.94
Sequence Information
- Coding Sequence
- ATGTCTACGAATCagcagtatagtctccggtggaacaaccaccagccgaacttcatctcgatgttcaccagtctgctgagtacaaagactctggtagatgtcactttggccgctgaggggaaacaaatgtgtgcacacaaggtggtcctctcagcttgcagcacatactttcagtcactgttcgtggagaacccgtcgacgcaccccatagtgatactgaaggacgtgtcgttcgccgacctgcggataatggtggacttcatgtactacggcgaggtgaacgtgacggaggcgcagctgccGAAGGTGCTCGAGACGGCGCGTATGCTCAAGATCAAGGGGCTGACGGAGATGCCGGAGAACACGTCGCTGACGCGGTTCCAGGGCTCGGAGCGGATCAGCGCCGTCGGGGAGTACCACACGCCCGACAGCGAGTCGCACCTCATCTCCTCCTCGCCGCCCTCCTCGCCGCACTCGCCCCCCTTGCCCGGCGTCACCGCCCACAAGCGGAAGCGACGCAGGAAGCTGTCGATGGAGTCGACCGGCCTGAGCCGCGCCCACGACATATCGCAGGAGCTGAAGAGCGACGAGGCGGGGCCCTCGTTGGACCTCGTCCAGAGCGAGACGGTCACTCTGAGCAGCCTGCCGCAGCAGAAGCACACGCGGGACGCGGACGACAGGCAGTTGTGTGTCAACACGCCGCAGACGCAGCCGGGGCACAATCTCAACAACATGGAGACTTTGCATCTCGACCAGCACCCGGGAATGTCGCAAGGAGGACAGTGGAGTATGATGGAGCACACATACCCGCGATACACGAACGCGTGTGCGAGCGGAGGGATGCAGGGCGACACCGGCATGTACGTGAACAACGTGCTCAACCAGCACGTGGACGAGCTCAACTACGGCCAGGGCCTCGGCGTGGGCCCCGGCTGCGTCGCCGAGCAGCCTTCGCAGCCCAGCGAGACGCCCGTGCAGACGAAGCGGCGGCGCACCACCAACCCCCAGTCGGAGGAGAACTTCCAGAGGGCGCTCGAGGCGGTCCGCTTCGGCGGCATCGGCTTCTGCAAGGCGGCGCGCATATTCGGCGTCAACAACAGGACGCTCTGGCTCGAGTACAAGAAGAAGGGCTACCCGAACAACCGGCCGAGCATCAAGAGCCGCATCAAGAGGGAGCACACGACGCCGCCGCCCGAGCACAAGGAGGAGGCGCAGCAGCCCGAGCAGCAGATGGCGGTCATCTGCTCGCCGCCCGTGCAAGTGGGCTTCATCGACAGCCGCCCGCTCGACTTCCCGCTGCAGGGCGTCGCGCACAACCCCTCCATCAACATTCTCGGGATGAACTTCAACTCGATCCAATAG
- Protein Sequence
- MSTNQQYSLRWNNHQPNFISMFTSLLSTKTLVDVTLAAEGKQMCAHKVVLSACSTYFQSLFVENPSTHPIVILKDVSFADLRIMVDFMYYGEVNVTEAQLPKVLETARMLKIKGLTEMPENTSLTRFQGSERISAVGEYHTPDSESHLISSSPPSSPHSPPLPGVTAHKRKRRRKLSMESTGLSRAHDISQELKSDEAGPSLDLVQSETVTLSSLPQQKHTRDADDRQLCVNTPQTQPGHNLNNMETLHLDQHPGMSQGGQWSMMEHTYPRYTNACASGGMQGDTGMYVNNVLNQHVDELNYGQGLGVGPGCVAEQPSQPSETPVQTKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARIFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEAQQPEQQMAVICSPPVQVGFIDSRPLDFPLQGVAHNPSINILGMNFNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386842;
- 90% Identity
- iTF_01386844;
- 80% Identity
- iTF_01388621;