Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000452.1:173788-190483[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.44 26 5.7 4.6 1 23 5 28 5 28 0.94

2 16 0.39 23 5.9 0.6 2 23 55 76 54 76 0.96

3 16 0.1 5.9 7.8 0.6 2 23 99 120 98 120 0.96

4 16 0.1 6.1 7.7 7.2 1 23 288 311 288 311 0.93

5 16 0.012 0.67 10.7 0.3 2 23 338 359 337 359 0.96

6 16 7.6 4.4e+02 1.8 0.4 3 23 383 403 381 403 0.80

7 16 0.14 8.4 7.3 3.1 1 20 434 453 434 457 0.82

8 16 0.00014 0.0081 16.8 0.9 1 23 464 487 464 487 0.97

9 16 0.13 7.6 7.4 6.2 1 23 584 607 584 607 0.95

10 16 0.11 6.2 7.7 0.4 2 23 634 655 633 655 0.97

11 16 0.1 5.9 7.8 0.6 2 23 678 699 677 699 0.96

12 16 0.046 2.7 8.8 2.6 1 19 730 748 730 753 0.77

13 16 0.00053 0.031 14.9 1.3 1 23 760 783 760 783 0.97

14 16 0.27 16 6.4 7.0 3 23 866 887 864 887 0.95

15 16 0.1 6 7.7 0.2 2 23 958 979 957 979 0.96

16 16 0.036 2.1 9.2 0.4 1 19 983 1001 983 1003 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.44	26	5.7	4.6	1	23	5	28	5	28	0.94
2	16	0.39	23	5.9	0.6	2	23	55	76	54	76	0.96
3	16	0.1	5.9	7.8	0.6	2	23	99	120	98	120	0.96
4	16	0.1	6.1	7.7	7.2	1	23	288	311	288	311	0.93
5	16	0.012	0.67	10.7	0.3	2	23	338	359	337	359	0.96
6	16	7.6	4.4e+02	1.8	0.4	3	23	383	403	381	403	0.80
7	16	0.14	8.4	7.3	3.1	1	20	434	453	434	457	0.82
8	16	0.00014	0.0081	16.8	0.9	1	23	464	487	464	487	0.97
9	16	0.13	7.6	7.4	6.2	1	23	584	607	584	607	0.95
10	16	0.11	6.2	7.7	0.4	2	23	634	655	633	655	0.97
11	16	0.1	5.9	7.8	0.6	2	23	678	699	677	699	0.96
12	16	0.046	2.7	8.8	2.6	1	19	730	748	730	753	0.77
13	16	0.00053	0.031	14.9	1.3	1	23	760	783	760	783	0.97
14	16	0.27	16	6.4	7.0	3	23	866	887	864	887	0.95
15	16	0.1	6	7.7	0.2	2	23	958	979	957	979	0.96
16	16	0.036	2.1	9.2	0.4	1	19	983	1001	983	1003	0.95

Sequence Information

Coding Sequence: ATGTTGCATAACTATTTTTGTCTTTTCTGTGAATTGTCATACGAACACACGCACGATTTGAAAAAGCATGTCCAAGAGAAGCACAACGATGAAGAAATAAAGTCATTCGTGGAAAACAGTAATACAGAAGAAAACTCTTGCTTATTAGACATAACTAAATTAAAATGTAACCTGTGCTATTCTAAAATGAAAACATTAGATGAATTGATGAATCATCTAAATGTTCATGGAATAGAAATACATAAAGATATCGCCAACCGCGTACTCTCATTCAGAGTCGAGAACGAGACTCTGATTTGTCCGAATTGTCTTTTCTGTTTCGAGGATTTCAACGTTCTTGTGGATCACATAAAGACACATTACAAGAATTATCAATGCATCATTTGTCTCGCGACGTTTGAAAGCGAACCACTTTTTTATAATCATGCGTATATACACAAAATTGGTAACAACACGACTGCTAAAAAACCAGAAGTAAATACTTCAAATCCTCAGACTCTTGAAGCGGCTGAAGATGTCATGTTGATGAGAAAACATCTTCAGAACGCTAGAGCAATTCTTTTAAACACGaacgcgactcctttcaaagGTGGCAACATCGGGACCTCTAGCATTACTTGTGAGGCTACCGCAAGTAATCCTTTAAAAATTGAAGAACCCGAAGTATATGGTAATGAAAGTAATGTACCAGTCGAACCGTTTGAGGTTACTGCTGAATTTGCGTCTGGCTCTACAAAAGCCACTCGTATTTATATTAAGATAAACAAGAAGGTTATAATGTATAAACATCTTGAAAATATAAGAACAATACTTTTGAATTCTAACGCCACTCCTGTAAAACATAAAACATTGATGCAGCACTATTGCTGTCATTTCTGTGAATTGTCATACAAAGATACGCACGATTTGAAAAAGCATGTTCTAGAGAAGCACAACGATGGAGAAATAAAGTCGTTCGTGGAAAACAGTGATGCAGAAGAACTCTCCTTCTTATTAGACATAACTAATTTAAAATGTAATTTCTGCGATGTCAAAATCAAGACATTAGATGAATTGATGAATCACTTGAGTGTTCATGGAAAAGAAATACATAAGGATATCGCCCACCGCGTACTCTCATTCAGGGTCGAGAACAAAAAACTGATTTGTCCAAATTGCCTTTTCTGTGGCGAGGATTTCAACGTTCTTGTGGATCACATCAAGACACATTACAAGAATTACCATTGCATCATTTGCGCCGCGACGTTTGAAAGCGAACCACTTTTTTATAATCATGCGTATATCCACAAAATTGGTAAATTTCCGTGCGCCCATTGCAATAAAGTGTTTAGTTCACAACTTGAGTGTCAAAACCACGAGTATTATATACACTGTGGCTACAAGAAAAAGTTTATATGCGTACATTGTCCAGAAAGATTTATGACTCAAAGCCCATTAACGGATCACATGATGACTAAACATGGGATGATAACACAAAGTGGCAACATCGTGACCTCTAGCATTACTTGCGAGGCTACCGCAAGTAATCCTATAAAAATTGAAGAACCCGAAGTAGATGGTAATGAAAGTAACGTACCAGTCGAACCGTTTGAGGTTACTGCTGAATTTGCGTCTGGCTCTACAAAAACCACTCGTGTTTACATTAAGATAAACAAGAAGGCTATATTGAATAAGCATCTTCAAAATATAAGAACACTACTTTTGAATTCTAACGCCACTCCTGTAAAATATAAAACCATGTTGCAAAACTATATTTGTCATTTCTGTGAATTGTCATACAAACACACGCACGATTTGAAAATGCATGTCCAAGAGAAGCACAACGATGAAGAAATAAAGTCGTTCGTAGAAAACAGTGATACAGAAGAAAACTCTTGCTTATTAGACATAACTAAATTAAAATGTAACCTGTGCTATTCTAAAATCAAAACATTAGATGAATTGATGAATCATCTAAATGTTCATGGAATAGAAATACATAAAGATATCCCCAACCGCGTCCTCTCATTCAGAGTCGAGAACGAGACTCTGATTTGTCCAAATTGCCTTTTCTGTTTCGAGGACTTCAACGTTCTTGTGGATCACATAAAGACACATTACAAGAATTACCATTGCATCATTTGCGCCGCGACGTTTGAAAGCGAACCACTTTTTTATAATCATGCGTATATACACAAAATTGGTAAATTTCCGTGCGCCCATTGCAATAAAGTGTTTAGTTCACAACTCGAACGTCACAACCACGAGTATTATATACACTGTGGCTACATAAAACAGTATATATGCCTACATTGTCCAGAGAGATTTTTGACTCAAAGCCTATTGACGGATCACATGATGACTAAACATGGGATGATAACACAAAGTGGCAACATCGTTGAAGAACCAGAAGTAAATGCCAATAAAAGTAACGTACCTGTCAATCCGCTTAAGATTGCTGCTGATTTTACATCTGGCACTACAAAAACCACTCGTGTTTACATTAAGATAAACAGAAAGGCGATAATGAATAAGCATCTTCAAAATATAAGAACACTACTTTTGAATTCTAACGCCACACCTGTTAAACATAAAACCATGCTGCAAAACTTTTGGTGTCATTTCTGTGAATTGTCATACAAACACACGCACGATTTGAAAAAGCATGTCAAAGAAAAGCACAACAATGAAGAAATAAAGTCATTCGTGGAAAACAGTAATACAGTAGAAAACTCTTGCTTATTAGACATAACTAAATTAGAATGTAACCTGTGCTGTTCTAAAATAAAAACATTAGATGAATTGATGAATCATCTAAGTGTTCATGGAATTGAAATACATAAGGATATCGCCAATCGCATACTCTCATTCAGAGTCGATAACGAGACTCTGATTTGTCCGAAATGTTTGTTCCGTTTCGAGGATTTCAACGTTCTCGTGGATCACATAAAGACACATTACAAGAATTATCAATGCACCATTTGTCCCGCGACGTTTGAAAGCGAAGAACTTTTTTACAATCATTTTTATTTCTACAAAATTGGTGACCACATCGAAATCGCTAGAAAAATTCGCGAACTGACCGTAAGTAGAAGGATTAAAAGTGCAATTCCTGAAGTTGTCATCAATAACCATAATGTGCCCGCTGATTGGACTGTAACTATTAAAACGAATACAGCCAAACCTGTTACAGTCTTGCCAAGACAAGCCAAGCCAGTGACAATAATCAAATTGAATACAGCCAAGTCTGGTACTAAAAAAACTAATACAGCCAATCCTGTTACTATAAAATCGAATTCATCCAGGCCTGGTACTTTTAAATCGATTAAAGCCAAGCCTATTACTATTAATTTGGATACAGCCATTCCTATATCTAACACAACAGGTCCTATAAAGAAAGCAGAGAAAAGGAATCCAAATGTGATTATGAAATCTTATGAAACCATACTAAACAAGGAGCTGATGAATAAACACTTGCAGAACATGAGAGCCATACTTTTAAACACAAACGCCACTCCTGTAAAACAACAAATATCATTAAATTACTACTGCAATTTCTGTATATTTTCATGTCCAAACATACACAAACTAAAAGAGCATATACTACACGACCACGTCGATTTTCAAATACGGAACTTCATGAAAGGGaagtgcagcatgaagagtcacctgctgacgaaacacggggaaCTTGTTACTTAA
Protein Sequence: MLHNYFCLFCELSYEHTHDLKKHVQEKHNDEEIKSFVENSNTEENSCLLDITKLKCNLCYSKMKTLDELMNHLNVHGIEIHKDIANRVLSFRVENETLICPNCLFCFEDFNVLVDHIKTHYKNYQCIICLATFESEPLFYNHAYIHKIGNNTTAKKPEVNTSNPQTLEAAEDVMLMRKHLQNARAILLNTNATPFKGGNIGTSSITCEATASNPLKIEEPEVYGNESNVPVEPFEVTAEFASGSTKATRIYIKINKKVIMYKHLENIRTILLNSNATPVKHKTLMQHYCCHFCELSYKDTHDLKKHVLEKHNDGEIKSFVENSDAEELSFLLDITNLKCNFCDVKIKTLDELMNHLSVHGKEIHKDIAHRVLSFRVENKKLICPNCLFCGEDFNVLVDHIKTHYKNYHCIICAATFESEPLFYNHAYIHKIGKFPCAHCNKVFSSQLECQNHEYYIHCGYKKKFICVHCPERFMTQSPLTDHMMTKHGMITQSGNIVTSSITCEATASNPIKIEEPEVDGNESNVPVEPFEVTAEFASGSTKTTRVYIKINKKAILNKHLQNIRTLLLNSNATPVKYKTMLQNYICHFCELSYKHTHDLKMHVQEKHNDEEIKSFVENSDTEENSCLLDITKLKCNLCYSKIKTLDELMNHLNVHGIEIHKDIPNRVLSFRVENETLICPNCLFCFEDFNVLVDHIKTHYKNYHCIICAATFESEPLFYNHAYIHKIGKFPCAHCNKVFSSQLERHNHEYYIHCGYIKQYICLHCPERFLTQSLLTDHMMTKHGMITQSGNIVEEPEVNANKSNVPVNPLKIAADFTSGTTKTTRVYIKINRKAIMNKHLQNIRTLLLNSNATPVKHKTMLQNFWCHFCELSYKHTHDLKKHVKEKHNNEEIKSFVENSNTVENSCLLDITKLECNLCCSKIKTLDELMNHLSVHGIEIHKDIANRILSFRVDNETLICPKCLFRFEDFNVLVDHIKTHYKNYQCTICPATFESEELFYNHFYFYKIGDHIEIARKIRELTVSRRIKSAIPEVVINNHNVPADWTVTIKTNTAKPVTVLPRQAKPVTIIKLNTAKSGTKKTNTANPVTIKSNSSRPGTFKSIKAKPITINLDTAIPISNTTGPIKKAEKRNPNVIMKSYETILNKELMNKHLQNMRAILLNTNATPVKQQISLNYYCNFCIFSCPNIHKLKEHILHDHVDFQIRNFMKGKCSMKSHLLTKHGELVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -