Smyo005546.2
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000279.1:170009-187981[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.1 4.7e+02 1.8 6.5 1 19 245 263 245 266 0.94 2 12 0.38 22 5.9 2.2 2 23 282 303 281 303 0.90 3 12 2.4 1.4e+02 3.4 0.4 2 15 341 353 340 356 0.79 4 12 1.4 80 4.2 0.3 2 23 367 388 366 388 0.95 5 12 1.1 63 4.5 3.3 1 20 801 820 801 823 0.89 6 12 0.0028 0.17 12.6 0.2 2 23 829 851 829 851 0.97 7 12 7.7 4.5e+02 1.8 0.4 2 23 960 981 960 981 0.92 8 12 0.0023 0.13 12.9 2.2 1 23 996 1018 996 1018 0.98 9 12 5.6e-07 3.3e-05 24.3 2.4 1 23 1024 1046 1024 1046 0.98 10 12 0.00024 0.014 16.0 1.0 1 23 1051 1073 1051 1073 0.97 11 12 0.012 0.69 10.7 1.2 2 23 1078 1100 1077 1100 0.94 12 12 0.00081 0.047 14.3 2.4 3 23 1139 1160 1138 1160 0.94
Sequence Information
- Coding Sequence
- ATGGACGAACCTCAGGCGACAAGGCGTAGAAAAAGCAAATTAACGCACCAAACTGATATTGAAATGGACGACGATTATATTGAAATTCTACGTTTGCAGAATTCTGTACAAGAGGTGAGCAGTATGATGAAGAACATGACCACAAAAAAATTTAAACAGGCCAACAGGAACTTCGCCGTCGCCATAACTGTTGAACAAGTGAAAGAAGAGAAAGTTGAAGAAGAAACTATTGATAAAGCGAACGACAAGGACGAATACAAATTTAAAACGAAACAAAAGATAATTGACAGAAAGAGAATGTGGCAACTGATGGAATCAATTTCCATCCTTGGAAACGGATTCACCAATTATGCAGATCGGCAGCTAGCTGTCGAAGTTGGCAACACTTGGGGTAGATTGGAGACGGAAAATTATAAAGAATCCAAGAAAGAGTTGGCAATTCAGCAAGCGTTATTTGAGTGGCAGACTTGGTATCGCACTAATAAATCTAATTTCTCCTTTGTAGAGACACCCACATCCTACAAATGCTATGTCTGTTCAAAGGGATGGTGGCGTTTAAACCCATTTAAGGAACACATCGAAACACACAAAGAAGAATTGAACATTTCAGTGGAGACTGTGAGTTTAAAATGCAATATGATTGCATACATTGGCGAAAAGCCTAAACCAAAAGTTGTTCCAATAGATGGATGTTGCTTGAAGTGTTTTAGAGGTACAGAGGACCACGAAAACCATAAATGCGATACGTGTCTAACGGTTTTTAATTATTGTTCAGCTTTCTACAGACACAATTGCTTATCGTCAAGCATTAGTCGTGTAGAAATTGTGGGACCAGACATTATCACGTGCACAATTTGCGGTTATAAATGCAAATCTTCCTTAATGAACAATCATAGATTATTACAACACACTGTGCCCTCGGATGAGCCTGTGGACTTTTTGCCCAAAAAGCACAAGGATTGTGGCATGAAATATGTGTGCCTGGAGTCACACGCTTGTCCGTTTGAGACGAGGCAGATTTATTGCAACTATTGTACGAGGAAATTTCACAACGGTTTACTCTCTAAATTGCATATGGAAATAGCTAATTCGGATGTTACATGTCAGATATGCTCTGAATTGTTGCCAAGGCAATGCATGCTGATGGAGCATCTGTCGGCTCACAGCGAACACTTCGTGATGGTGCCCAAATGTTCCCTTTGCACAGTTCCCGTCGTATTTTCCGACGACGTTTCGGCCAAATATCACATGAAGGCGTGCCACGACAAGATAGAGACCAGGAACAGGACTTACCACGATATGGTTATTATACCGAAAGTTATTGTACAAAAATGGCCGAGTAATGATTTAATGGATATATCTGCAATTAATAAACAAAAAAACACCATAACTGACAACGTCAAAAATAACGAAGACAGTAATAACATAATTAATAATGCAAAATCAAATGAAATAGAAATTGAAAAGAAGGCTAATGAAAATAATTTATCTATTGATTATGTTATTAAAAATACAAAAATTTCAACGAATAACAAAAATGTAGAAAGTTCCAAAAGCGTAAACAATGAAACGGACGACGAAAATAATGAACTTGTAATAGACGAGACTTATGACGATGATCTCATACTGATTGAGGATGATTCTCGGAAAGATAATGTTATAGAAATAATAGATGTATCCGATTCTGACGAAGAAACGCACAATACTAACAATGAAAAAGATAGCAAAGATGTCGATATAAAAATTAATAAAAACCTCGTTGACCCTAAAGTATATGTAAATAAGTCTCAAAAGAGCTCAAAAAAAGTTGCGAATGAAAATTTGAAAATTACTAATGAAAATTCTCAAACTATAAAAGAAATATATGTTGACGATGAACACATAAGGAAGATAGTTGAGAACGAAACCGGTGTTAAATTAGTTATAAAACAAGAAGTTAACGACGATTTTGAGCTGGAAATAGACGAGGAACTTTACGTAGACGACTTGATTATAAAAAAGGAGTCAGACGATTGTAACGAAGTTTTGACTCACATATTTGAGGCTTCCAAGTGCAACAATCATTTCGAGGCCGACGATGACACAAACATAGGTGTCATCATTAAAACGGAGACAGATGTAGTTGAAAAGCGGGAAAACGAGAAAAAGTTTGATGTGGATTTAAATGAAATAAAAAAGAGTGGTGCACGAAAATTCCTAAGCACCGAGGAGAAAATAAAATTGAGAATGTTACGCCGCAGTCTTAGGAAGATTTACAGTTGCAAGAAATGTTCATTCCAAGGTTATCATATGGCTTATGCACAGCATAGAAAGCAGTTTCATCCTTCAAAGCGAAGACATAAGCGACATAGTAGTTCAGAGGTTGAAATAAATATGCATGAATGGGCTTCGGAAAACATGTACAACTGTACCAAGTGCCTGAAAGAATTTAATACGTACTATAAGTACGTCGACCATTTTGTCTTCCACGATATAAGACCGAACACTTGTCCGCTGTGCGAAATGATTTTCGATATACCTTCAGCGCTTTGCAATCACATTCAAACTTATCACATTACAAGAAGCTTCGTGTCCTTTAGGGTTATAAATGACGAGAAAAGTTCGCAGGAAGTGAGTAAGGAACAAAAATACAAAACTAGACTTTTCAAGTGTACAGTGTGCGGAAGTAAAGTGCTGAAACAGCACTTTTTCATTCACTGGGAGAACCATTTCCGGTTCAAAGTATCAAAACAACATTTTGATACGAAGTCGCCGGATGTACAAATTGAAGAGAGGAATGTTAAGAACGCATTAAGTGCAAAAGTTTTAAAAAAAATAAAGGACGCGATAATGGGCGACAATGTGCGCGACATGAACAGGACATGTGTCGAGAGGAGGACATGTGTCGTTTGCTCGAAATACTCGAGTCGTAATTTTGAATCTATACGTCACCTGATCGAGCATCTTCTGTGCGACGCGTACGCCACCTATCCGCTGTACGAAGCGTTCAAGTGTCAGTTTTGTGGGGAAAAGTTCGACAAGATAATGATGTACAAACAGCACATGCGCGATCACGGCAATCTGCCGATATATCGGTGCGAACTGTGCGACAAGATGTTCAGCGATTCAAGTAATTTTACTAAACACAAGAAGGTGCACAATTTGAAAATATTCGTTTGCGATCTGTGCCAGAGGAAGTTCCAATCGAAGGTCTCTCTGGAGAAACATTTGCAGGATCACGACAAGCCAGTCACGTGTAAACTGTGTCGTAGAGTTTTCCCACTAAACACACAATACAGACGTCACCTGACAAATTATCACCAGAAGCATCATATGCAATTCGCATGTCCCATGTGCAGGGAAAAGTTGCCCACTATGAAAGCGAAATGGGACCACATGTGGTCCGCACACAAGTTAAGGAAGACTAAGCAGGATTGCAAGATTTGCGGTTTGGGCTTTAGAAAACTGAGCGATCTTAAAAAGCATTTCAAACACGACCACTTGATGCCATATCAATAG
- Protein Sequence
- MDEPQATRRRKSKLTHQTDIEMDDDYIEILRLQNSVQEVSSMMKNMTTKKFKQANRNFAVAITVEQVKEEKVEEETIDKANDKDEYKFKTKQKIIDRKRMWQLMESISILGNGFTNYADRQLAVEVGNTWGRLETENYKESKKELAIQQALFEWQTWYRTNKSNFSFVETPTSYKCYVCSKGWWRLNPFKEHIETHKEELNISVETVSLKCNMIAYIGEKPKPKVVPIDGCCLKCFRGTEDHENHKCDTCLTVFNYCSAFYRHNCLSSSISRVEIVGPDIITCTICGYKCKSSLMNNHRLLQHTVPSDEPVDFLPKKHKDCGMKYVCLESHACPFETRQIYCNYCTRKFHNGLLSKLHMEIANSDVTCQICSELLPRQCMLMEHLSAHSEHFVMVPKCSLCTVPVVFSDDVSAKYHMKACHDKIETRNRTYHDMVIIPKVIVQKWPSNDLMDISAINKQKNTITDNVKNNEDSNNIINNAKSNEIEIEKKANENNLSIDYVIKNTKISTNNKNVESSKSVNNETDDENNELVIDETYDDDLILIEDDSRKDNVIEIIDVSDSDEETHNTNNEKDSKDVDIKINKNLVDPKVYVNKSQKSSKKVANENLKITNENSQTIKEIYVDDEHIRKIVENETGVKLVIKQEVNDDFELEIDEELYVDDLIIKKESDDCNEVLTHIFEASKCNNHFEADDDTNIGVIIKTETDVVEKRENEKKFDVDLNEIKKSGARKFLSTEEKIKLRMLRRSLRKIYSCKKCSFQGYHMAYAQHRKQFHPSKRRHKRHSSSEVEINMHEWASENMYNCTKCLKEFNTYYKYVDHFVFHDIRPNTCPLCEMIFDIPSALCNHIQTYHITRSFVSFRVINDEKSSQEVSKEQKYKTRLFKCTVCGSKVLKQHFFIHWENHFRFKVSKQHFDTKSPDVQIEERNVKNALSAKVLKKIKDAIMGDNVRDMNRTCVERRTCVVCSKYSSRNFESIRHLIEHLLCDAYATYPLYEAFKCQFCGEKFDKIMMYKQHMRDHGNLPIYRCELCDKMFSDSSNFTKHKKVHNLKIFVCDLCQRKFQSKVSLEKHLQDHDKPVTCKLCRRVFPLNTQYRRHLTNYHQKHHMQFACPMCREKLPTMKAKWDHMWSAHKLRKTKQDCKICGLGFRKLSDLKKHFKHDHLMPYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -