Smyo006373.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000323.1:320368-324679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.26 15 6.4 0.5 1 23 361 383 361 383 0.95 2 10 0.0036 0.21 12.3 3.8 1 23 390 412 390 413 0.94 3 10 0.047 2.8 8.8 1.7 1 23 417 439 417 439 0.97 4 10 5.6 3.3e+02 2.3 1.7 1 20 444 463 444 467 0.65 5 10 0.07 4.1 8.2 0.2 1 23 471 494 471 494 0.93 6 10 1.4 82 4.1 0.2 3 23 579 600 577 600 0.95 7 10 0.037 2.2 9.1 1.0 2 20 616 634 615 637 0.89 8 10 1.9e-05 0.0011 19.5 0.6 1 23 643 665 643 665 0.98 9 10 0.00044 0.026 15.2 3.9 1 23 672 694 672 694 0.96 10 10 0.0003 0.018 15.7 2.8 1 23 700 723 700 723 0.92
Sequence Information
- Coding Sequence
- ATGAGGTGCTGTGTGCCAGGCTGTAAGAATGACTCCAGACATTTGTCTAAATCGCACGGAATCACCTTTCATGTATTCCCAGTGGAGTCGTCATCTCGGACGCTCTGGCTTCGTGCCGTCGGCAAAGACAGTTGGGAGCCGAAGGAACGCAGCACTGTTTGCTCAGACCACTTCCAGAGCGAAGACCTGTACGAGACCAAGAGTGGACTGAGGAGGGTTCGTTCAGGGGCTGTGCCCTTCGTCCAAGAGGCTTCGCTCGTTGATGATGAAGAAGAAGAAGAAGTCATGAAGGTGTGTCGCATCTGCCTGGCGACGGACACCAGACTGCTTTCCCTCAAGAAGCACAAACTGGAGAGAGCCTTTATCAACATCACTGGATTCGCGGGCGAGGAGGCCTACTGGGGGACCGTAGGGCTCGGGGCGTGTGTGTGTGTGTGGTGCTTGGCTCGGTTGAGATCGGCGGACGAGTTGCGCTCGCGGTCCAAAAGAGCTCACGCCCTGTTTACAACTCGTGCGCAGATGACAATTGAAAATGTAAAAGAGATCGATCGAATAGAGAACCACCTGACCCTGAACCTGTCCATCAAACATTTTCCACCGAACCACACAGACTCCAGCATCAGACATTCGATGGAATCCGAAGAGGCCATTCATTGCGAAGAAGTCACAGAAGTGGACATCAAAGAGGAGGAGGAGGAGACTGGCGACGACGCCAACGAAATATTCATAGATGAAACTCAATTCAACCAAGACGAAGTCAAAGAAGAAAGCAACGAAAACGCTATAGAGGACTCAAATTTTGCAGTTTCCGAAGGAGAGTATTCGACAGATGATAGTTTACCATTAGAAAGAAGAAGGACAAAGTCCAAAGAGAGCATAGAGAAGAAAAAGAAGAAAATAAAGAAGAAGAGTAAAAAGAGCAAAAGGTCAAAAGTTGAGCCAAAAGTTGACAGACGAAGAAAACCGTTTCTAAATGAAGACTTAAACGAGACTCTATTCACGATAACAGACTTGACATTTGATGAGCAAATGGCGGAGATTCTGAAGAGGCAAGAAAGCGCAAATTACAAGAATTCCGCATTCAAATGTACATTTTGCTACAAAGGATTCTTAGACGAAGACGCGTACAACGGTCACATAGTGAAACACACTCGACAATGCGGGGAATACGCATGCGCAGTGTGCAAGACACATTTCCGCCAACCTCATCCGCTGCGCAAGCACATAACTGCGCATCACACGCAAAGATACAGTTGCAATCAGTGCCCGTACGTGACCACGCACAGACAGACGGCGAGACTGCACGAGAGATGGCACAAGGGCACAAAATACAAATGTCCCCACTGTCAAGATGAGTTTCTAAAGTTCACCACATACATGGGACACGTTCGCATAAAACATCCATCGCATTTCATATGCGAATTATGCGGAAATTCATTTGTTAGCGAAAAAGGGATAGAGTTGCACAAGAAATTGAAGCACAGATTGGACGATGCGCAAATTCCACCGGACGGACCTTATTGCGAGACTTGTCAAGTGCGCTTCGTCTCTGTCGAGGCGCATTTGAAACATTTACAAGTGTCAGCGAGACACGCAGATACGGAAAAAAAGCCTAAAGAGAGTAACAACGCAGAGAAACGCACAAAAAAAGATAATTCAAAAGAAAAACGCGAATCTAGATCGGAAACAAGGTCATATCCGAGCCAAGTCCGCAAAGCGGAAGGTCCAATAGCGTGCGAACAGTGCGGCATTGAATTGGAAGATTCCAGAGCATATCACGGCCACTTTAGACGCATGCACCCGGACAAGAATCGAACTCAGTACCCCTCGATGCGTTCGCCGTGCATGTGCGAAGTATGCGGAAGACTGTTCCAGAGTAGAGCCCTATTGAGAGACCACAGATGGACTCATACGGGCGAGAGGCCGTTCTCTTGCGGTGAATGTGGCAAGTCTTTCCGCATGCGCCAACGCCTAGTTGCGCATAGGAGGGTGCACGCTGCGCAAAAACCGAGATACGCATGCGCAGCGTGCGGAAAACATTTCACGACACACAGCAACAGACAAAGGCACATGTTCATTCACACAGGACTGAAGCCGTTCGCGTGTGAAATGTGCGGAAAGTGCTTTAAGCACGCGAGCGAAAAACGAGCTCACGTGACATACGTGCACTTGAAGAAGCCGTGGCCTAAGCGAGCGCGCGCAAAACGCCGCGGAAACGCAGCGGTTCAGCCGCCGGATGTGGCGCAAGTGTGGCCCTCTCAGGATGGAGACCATCAAATCAATGACAAACCTCTGTATTATGATATCAAAATGTAG
- Protein Sequence
- MRCCVPGCKNDSRHLSKSHGITFHVFPVESSSRTLWLRAVGKDSWEPKERSTVCSDHFQSEDLYETKSGLRRVRSGAVPFVQEASLVDDEEEEEVMKVCRICLATDTRLLSLKKHKLERAFINITGFAGEEAYWGTVGLGACVCVWCLARLRSADELRSRSKRAHALFTTRAQMTIENVKEIDRIENHLTLNLSIKHFPPNHTDSSIRHSMESEEAIHCEEVTEVDIKEEEEETGDDANEIFIDETQFNQDEVKEESNENAIEDSNFAVSEGEYSTDDSLPLERRRTKSKESIEKKKKKIKKKSKKSKRSKVEPKVDRRRKPFLNEDLNETLFTITDLTFDEQMAEILKRQESANYKNSAFKCTFCYKGFLDEDAYNGHIVKHTRQCGEYACAVCKTHFRQPHPLRKHITAHHTQRYSCNQCPYVTTHRQTARLHERWHKGTKYKCPHCQDEFLKFTTYMGHVRIKHPSHFICELCGNSFVSEKGIELHKKLKHRLDDAQIPPDGPYCETCQVRFVSVEAHLKHLQVSARHADTEKKPKESNNAEKRTKKDNSKEKRESRSETRSYPSQVRKAEGPIACEQCGIELEDSRAYHGHFRRMHPDKNRTQYPSMRSPCMCEVCGRLFQSRALLRDHRWTHTGERPFSCGECGKSFRMRQRLVAHRRVHAAQKPRYACAACGKHFTTHSNRQRHMFIHTGLKPFACEMCGKCFKHASEKRAHVTYVHLKKPWPKRARAKRRGNAAVQPPDVAQVWPSQDGDHQINDKPLYYDIKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388537;
- 90% Identity
- iTF_01388537;
- 80% Identity
- iTF_01387666;