Smyo004574.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synanthedon myopaeformis
Gene Symbol
ci
Assembly
GCA_944738625.1
Location
CALYFO010000225.1:610164-625507[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.00049 0.029 15.0 0.4 3 23 293 316 291 316 0.95
2 5 0.26 15 6.4 0.1 8 23 336 351 324 351 0.80
3 5 0.027 1.6 9.6 5.0 1 23 357 381 357 381 0.97
4 5 0.00044 0.026 15.2 0.4 1 23 387 412 387 412 0.97
5 5 1e-05 0.0006 20.3 0.3 1 23 418 443 418 443 0.97

Sequence Information

Coding Sequence
ATGGAGGTTATAGTTTCCATAAACCGACAAATAGCAAATTTTGATGTTCTCGGAGTCAGCAAATTTGTAGCAGATACAGACTACATGCATAGGTTTAGACTTGGTTTAGAGTATTTAAATGCTGCTAGGAGTTTACATCCAGAACTCCACGCTGGCAGCACACTCGCCAGTCAAGATTTTCAACTTAGTTTAGAAGGTTCCCGAATAGCTTCACCTACAAGGCTAAGGTTATCGGGAGGTGCTATCGCAGCTTCAACCAATCGTAAGAGAGCAGTATCATGGAGTCCATACTCTGCAGAGTCTTTAGATTTAGCAGCTGTAATTAGAGCATCGCCTGCTAGTTTAGCTGTTAGAGCGCCATCAGCAGCTTCTACGGGCAGTTATGGACATCTTAGTGCTGGAACAATATCCCCAGCACTTTCCCTGTCGCATGCGTCTCTTGCGCAACAGTTACTCGCGAGGGGAGGCGTTGGAGCCAGTGGAGTGTTGGCAGGCGGAGTTCTTCTTGATCCGGCTCATCAGCAAGCGGCCGCGGCAGCGGCACATCATGCAGCGCACGCGCATCTAGTCGCCGGCATTCACAGATCTCATATATCATCGCCGACGCAACTCTTGATGGGTGCGCCCGTAGATGTGAGACCAAGCCTCGGTCTCGACGGGACTCCGCCACAACATCTTCAGCAGCCTCCTCAGCAACCTGAAGTAACCAGTATCATGGAAGCTGATAGCGCATCAACTGCTATGACTCAACGGAAATCACCTCAGAGTTTACGAGACAACATGCACAGCAGTAAACCTTTGTCCGCGGCTGCTGAAAGTACAGTACACGACGGGCTGGACTTAAAAGACGAACCAGGGGACTTCATCGAAACAAATTGTCACTGGGTTGATTGTAAACTTGAATTTCCTACGCAAGACGACCTGGTCAAACATATAAATACGGACCACATTCACGCCAGCAAGAAAGCCTTCATATGTCGATGGGTGGGATGTTCCAGGGATGAAAAGCCTTTTAAAGCTCAGTATATGCTTGTAGTACACATGCGAAGACATACTGGTGAAAAACCACATAAATGCACTTTCGAAGGATGCTGTAAAGCATATTCAAGACTAGAGAATTTGAAGACCCATCTGCGAAGTCACACCGGGGAGAAGCCGTACACCTGCGAGTATCCTGGCTGTTCAAAGGCCTTTTCTAATGCTAGTGATAGAGCTAAGCATCAGAATAGGACACACAGTAATGAGAAACCCTACGTGTGTAAAGCCCCTGGGTGCACGAAGAGGTATACCGATCCTTCATCCCTCCGGAAACACGTGAAAACGGTTCATGGCGCTGAGTTTTATGCCAGTAAAAAACATAAAGGTTGTGTCCGTGGCGACGACTCGGCTGAATCTGGCGGCGGTGGTGCCGGTAGTTCGCCAAGGTCAGAGGAAGGAGGTGTTCCTCTGGGAATCCGAGGTCATACTTCTTCGGCGTCCATCAAGAGCGAGAGTCCAGCTTCTCCGATACCTCACGGGCTGCATACATCTGCTCATCAGCTGTCAGCTCAGTGTGGTGGAGATTTGGACTTCGGTGGGTCCGGTCTTGGTGGATTCAGTGACGAGAATGGCGCACCTTATTATAGGCTAGATGGAGAGGTCGAACAGGAAGTGGTGGGTGAAGTCGGTCAGTTGCCGCTGATGCTGCGAGCGATGGTGGCCATAGGAGAGCCGCGTCACCATCACGCGCCGAGATTCGGAAACAAGATGGCCGTCGTCGGGCGACTAGTGCCGCCACCTGTCGACATTGGAGGCATAGCTCCGAATCGGACGGACCTCACCAACACGAATGTGGCTGTAGAATTGAAGGCCGTACCCAATACTAGACGAGATTCGGGAATATCGTCCGGAAGCAGTTTGTACAGTGCTAGGTCGTCGGATATATCGCGCAAGAGCAGTCAGGCGTCGGTGGTGTCGGGCGCGATGGCCTCCGCGACAGGCGTCACTGCGCCGCAGCGATTAGTCTCTCAGCACGCTACTCTTTACGACCAGTTGTCGCCCGACAGTAGTCGCAGATCTAGTCAAGTGTCGTGTGTGGGTTATGCGCCGGCGCCTTCTTCAGCTTTGGCTGCAGTTCAGGCAGTAAGAACTTCTCAAGGGAATCAGGCGGTGCTTCTTCGAGGAGTGACGTGTTCAGAAGTGAGAGCTGAAGAACTGACCCTGGAATTGGATCCCAACATCCAAGTGAAGGAGGAAGCTAGAAGGCTTTCAGAACAATCCAATCTTAGTGATCAGACTCAAGCTTACCAACCGTACCCGTGTCCTACAGACGATGTTGGCGACGCTCCATTCCCTTTCAAGACAGAAGACGAACATGACTCTGTCACGTATAAAGAATCTCGATCAAATTCGACTAATACAGTGGTTATTACTACCGCTGCTCAAGTCCATCATCCCAATCAAGAAGTTAATTtggaacagGTGGCTGAAGGAGAGATGGTGGAGAATAAGTTGGTCATACCAGACGAGATGATGCAATATCTTAACCAATCGATATTGGGAACTGAATCTGTAGAACCAGCTAAAAAGGAGCCCACTAAATCAACGGAACCAGAAAAGACTAAAGATAAGGACGCTCCAACCAAAGACAATAATCAAACCAGTGAACACAATACGAATAGTTCCAGTGAAAAAATCAGTGATGTAGCAACAAGTGACGATTCTCTACTCAAAAACTTAGGTGCCATAGGTAGTGATCTCAATATAAGTGATATTCCAGTCGACTTAAGATCGTTAGATGTTAGTATGTCGGGCAATAGCGGCTCTCTTTTGGCTGTTAAAACCCCCGACGACAAGAACTCTTCCGTATCGGAACAAGTAATTCCCGAAGCAAAGGAACGACCCGAAAACGGTAACCATGACTATTCGAAACCAGTCTCAAGTAGTGTTACTACAAATAATCCGATGCAATCGTTACAGACGATGGCCGGAACTCAAAACGATGTTAACAGGATAAGAGCGAGTCAGTTGCCTCAAAAACAAAATTCAACGATGACTCAAAAACCAATGATGATGAGCCCACAGGGTGTAATGAGTCCGCAAAGTTTGGCTCACAGCATGATGAGTCCTCAGAGTTTGCCACATAGCGCTATGAGCCCACAAAGTGTAATGAGTTCTCATAACATGCCGCAATCCGTCATGAGCCCGCCCAGTGTATATAATGTAATGAGCCCACAAAGTGTCATGAGTGTTATGTCTCCACAACATAACGCCATGAGTCCTGTGAGTATTCAAAGTATAATGAGTCCACAGATGGCAAATCAAATTGTAATGAGCCCTCGTCACAACAACGTGGGTAGTCCCATGTCTCAAAATATGGCCAGTCCTATGGTGAACATGGCGAGCCCTATGCCTCAAAATATCGCCAGTCCTATGAGTCACGGGATGCCGAGTCCAATGCATCCAGGACTACAAAGTCCTATGGCCCAAGGCATGACGAGTCCTATGATCCAAAATGTCCCTAACATACCAATGAATGCGCCGAACCAGAATCAAAATGTTATGATGACTCCTCAAATTCCTGTACAAAATTTCATTAATATCAGACCAAATTGCAATACAAACATTCCAAATAAAAATTTCAATAGTGTCCCTAGCCAATATCCAAGTCATAATTATAATCAAGCCCCACCGTACCCTGCTCAAAATCCACAGAATGTGAACATGAGGAATCAAAACTTGCAGCAATATCAAATGATGCAACAATTCGGTCCTAGCCAAATATCTGCGCAACAACTGTCTCAACCACCTCAACCAAACATGAATTTCAACCAAATGGTTAACTATTCGCAACCGATCAACTATTCTCCCAATAATCAGATGCACCCTATGCAAATGTCCAGATCCTCAATGATGAGCGTTGACAATAGCGGCAACATGAGCCGCGGAACGATGGCTAACTATAACGACCAATGTCCTCCCATACAAAATACTCAATACAATCTAAACATGCATTTCTCTCAACCGCCTAACTACAATTCTGTCGTCAACGCTACAAATGTAATGGGTCCACCTCCACCGAAAAACAACCATCAATATAATCAAGCTATGATGAACAATAACCAGTACTACAATCACCAGAGGCCTTACAATCAATGGGATTATCCTGGGAATCAATTTAATAAACATAACCAGAAATCGGTGCAGAATTCTATGAACATGTCAACTGGTAGTCAAAAGCCTATTAACGGAACTAGGATGCAGAATTGCACTCAAATTGTTAAGAATGACCAACAAACGGATTGCAGTATGAACAGTTTGAGAAGCCAAAATCAACAGAGCGATGTTCAAGTGTGGGACATTTCGCAGTCGCAGATAGAGCCGACCAACGGAAGGAAGAAGAGTCAGAACAACACGATGCGACAAGAAACTTATCAGAGGACGTTAGAGTACGTTGAGAATTGCGAAAACTGGAAGAGTTCAGAAATGGTTTCGAGTAGTACACATCCTTTGCAAGGAGGAGATAATATGGTTGTAAACGATCTCCAAACATCCCTGTCTTCGTTTTATGAAGAGAATCAATACCTCCAAATGATTCAATAG
Protein Sequence
MEVIVSINRQIANFDVLGVSKFVADTDYMHRFRLGLEYLNAARSLHPELHAGSTLASQDFQLSLEGSRIASPTRLRLSGGAIAASTNRKRAVSWSPYSAESLDLAAVIRASPASLAVRAPSAASTGSYGHLSAGTISPALSLSHASLAQQLLARGGVGASGVLAGGVLLDPAHQQAAAAAAHHAAHAHLVAGIHRSHISSPTQLLMGAPVDVRPSLGLDGTPPQHLQQPPQQPEVTSIMEADSASTAMTQRKSPQSLRDNMHSSKPLSAAAESTVHDGLDLKDEPGDFIETNCHWVDCKLEFPTQDDLVKHINTDHIHASKKAFICRWVGCSRDEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYASKKHKGCVRGDDSAESGGGGAGSSPRSEEGGVPLGIRGHTSSASIKSESPASPIPHGLHTSAHQLSAQCGGDLDFGGSGLGGFSDENGAPYYRLDGEVEQEVVGEVGQLPLMLRAMVAIGEPRHHHAPRFGNKMAVVGRLVPPPVDIGGIAPNRTDLTNTNVAVELKAVPNTRRDSGISSGSSLYSARSSDISRKSSQASVVSGAMASATGVTAPQRLVSQHATLYDQLSPDSSRRSSQVSCVGYAPAPSSALAAVQAVRTSQGNQAVLLRGVTCSEVRAEELTLELDPNIQVKEEARRLSEQSNLSDQTQAYQPYPCPTDDVGDAPFPFKTEDEHDSVTYKESRSNSTNTVVITTAAQVHHPNQEVNLEQVAEGEMVENKLVIPDEMMQYLNQSILGTESVEPAKKEPTKSTEPEKTKDKDAPTKDNNQTSEHNTNSSSEKISDVATSDDSLLKNLGAIGSDLNISDIPVDLRSLDVSMSGNSGSLLAVKTPDDKNSSVSEQVIPEAKERPENGNHDYSKPVSSSVTTNNPMQSLQTMAGTQNDVNRIRASQLPQKQNSTMTQKPMMMSPQGVMSPQSLAHSMMSPQSLPHSAMSPQSVMSSHNMPQSVMSPPSVYNVMSPQSVMSVMSPQHNAMSPVSIQSIMSPQMANQIVMSPRHNNVGSPMSQNMASPMVNMASPMPQNIASPMSHGMPSPMHPGLQSPMAQGMTSPMIQNVPNIPMNAPNQNQNVMMTPQIPVQNFINIRPNCNTNIPNKNFNSVPSQYPSHNYNQAPPYPAQNPQNVNMRNQNLQQYQMMQQFGPSQISAQQLSQPPQPNMNFNQMVNYSQPINYSPNNQMHPMQMSRSSMMSVDNSGNMSRGTMANYNDQCPPIQNTQYNLNMHFSQPPNYNSVVNATNVMGPPPPKNNHQYNQAMMNNNQYYNHQRPYNQWDYPGNQFNKHNQKSVQNSMNMSTGSQKPINGTRMQNCTQIVKNDQQTDCSMNSLRSQNQQSDVQVWDISQSQIEPTNGRKKSQNNTMRQETYQRTLEYVENCENWKSSEMVSSSTHPLQGGDNMVVNDLQTSLSSFYEENQYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00785604;
90% Identity
iTF_01387196;
80% Identity
-