Smyo008254.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000437.1:66627-80319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00046 0.027 15.1 0.5 1 23 257 280 257 280 0.96 2 11 0.062 3.6 8.4 2.3 1 23 288 310 288 310 0.96 3 11 0.011 0.62 10.8 3.1 2 23 345 367 344 367 0.90 4 11 0.0048 0.28 11.9 1.0 2 21 372 391 372 392 0.92 5 11 0.00077 0.045 14.4 0.7 2 23 408 429 407 429 0.94 6 11 6.5e-05 0.0038 17.8 0.5 1 23 434 456 434 456 0.98 7 11 7.6e-05 0.0045 17.6 5.1 1 21 465 485 465 490 0.94 8 11 0.00036 0.021 15.5 1.8 1 23 498 521 498 521 0.92 9 11 0.032 1.9 9.3 0.6 1 23 527 550 527 550 0.87 10 11 0.018 1 10.1 0.4 3 19 563 579 561 580 0.89 11 11 0.0061 0.36 11.6 1.2 1 23 593 616 593 616 0.98
Sequence Information
- Coding Sequence
- ATGAACGAAATCAATATCAACATAGAAGGATACAACGTGAATGGGATATGTGTTGGTTGTTTGAATTATAATCGTAAAATGTTTTACACTAATAACATAAAAGAGTGTTTTAAACTATTGGCTAATATTGATGTCCCAGACGGTTTGATGATCCAAGTGTGCTGGGAATGTATGTCGGCCGTGAGACATGTGGAGGCGTTCCAAAAACTAATTCTAAATTCCTATGATGTTCTAATTAAATACTCCAAGGAGCACACCTTCTTGAATTCGCCATCAGATTTGACGAAACACGCCACACAACGTCTTTCGAAAACGCCTGTCAAGCTTGAGGGATTCTCCGAAGAAGTACAGGAACAGGTGGTGGACTTTGATTCAACAAAATTTGATAACGTACCAATCAAGAATGAAGTTGAAATTGAATTTGAAAATAATTTCGAAGAGCCCAAAGAGGAGCCCCCGAGTATTGATGATGACGTTGAGTTTCCCGAAGTGCCTGTAACATTCGAAAGCCAGTCGTCCGATGACGATATACAACTGTCCCAGTTGAAATGGAAGGAGGAAAAGAAAGAGAAGAAATCTAAGAAAAGTAAAAAAGATAGGAAAAAAAAGTCGCACAAAGAGGCGAACAACTCGTCGTCGCTTACGCGCGATCAAAGAAAATTGAAAAATCTATCCGAAGATTTAGTGCGACTGCACACTATGAGCGATGAGGAAATGTTGCGAGTCAGATCCGAAGATATCGCCAGTAAGGAGTTTCGCAAATTGAAATACAAATGTGAAGATTGTGTGCTGACATTTAACACTCAAAAGTTGATGGTCGATCATATGAATGGTAAACATAAGAAGAAAGGTCCGGATTCGCACCAGTGCGACGTTTGCAAAGCTTACTTTCTGACCAAAGACAATCTGTCCACGCACCGTTCGTTACATTTGACGGCGTACAGTTGCGTACAGTGCGAATTCAAAACTACCCTCAAAAGGGTCATTTTGAAACATTGTAGGGTACACAACGCTAATAGTACGGAATACAAAACTTGCAATACTTGTGGAAGTGTTTTCAGTTCAAAATCAAAGTTATCGTATCACAAAGGTATATGTCATCAGGAGAAACCGCAGTGCGATTGTTGCGGTAAAGTATTCGCCAATAAAATGACACTAAAGTATCATCTCAAGATCCTACCATTGAACAAAGAGGAAAAACCTAAGGAGAAGTTGTTCCTACCGTGCAAAGGATGCGATAAAATATTTCATTCAAGAAAGAGTTATCGAGCTCACGTCGTGATACACGACGGACTGACGTACCCGTGTCAGATATGCGGCAAACTGTTCCAATGGAAGCGGAACCTCGCAAGACACATGCGGAACCACCGCGAGAAGGACGCCGGAGCACTGCACGAGTGCAGGGAGTGCGGCAAGAGTTTCTCTAGTCGCGACTGTTACAACAATCACATGAGGCTCAGCAAGAAGCACGTCGACGAGGACGCCTACGTACACGAGTGCAATTATTGTGGCAAAAAATTCGCCACGAAATGGTGTATGGTGGATCACATTGACTGGGACCATCTCAAGACGATCAAGTATCAATGCAGTTTCTGTTTTAAGGCATTCAAAACGGCGAAAATAATGGTCGCCCACGTGAACAATTTACACCAAGGCAAGAAAAAGGAACCGGAAGGCGAGCATTTGTGCGAAATATGCGGAAAATCGTACAAGACGGTGAAACGTCTAAAGGGTCACGTGTGGGCAATGCACACGAACAGATCGACAGCGAAAAGTTTCAAATGCAAATTGTGCCCGGCGACGTTCACTTGGCAGACATCTATATATAAACACATGAAGATGATGCACGACAACAAGAAAAAGCCGACCAGATACCGCGACGCGCCGCCACAGAACAAGAAACCCGAAGCGTACACAGAACAAGCGAATAATAGAACGCAAAGTTTCCAACAAAACTTGCCCACAGTACCGAATATTGTTAACAATCTAGTACCGAACATAGTGACCAATATTGTTTCCAATGCTTTCGTTTTAGGCGTTTAG
- Protein Sequence
- MNEININIEGYNVNGICVGCLNYNRKMFYTNNIKECFKLLANIDVPDGLMIQVCWECMSAVRHVEAFQKLILNSYDVLIKYSKEHTFLNSPSDLTKHATQRLSKTPVKLEGFSEEVQEQVVDFDSTKFDNVPIKNEVEIEFENNFEEPKEEPPSIDDDVEFPEVPVTFESQSSDDDIQLSQLKWKEEKKEKKSKKSKKDRKKKSHKEANNSSSLTRDQRKLKNLSEDLVRLHTMSDEEMLRVRSEDIASKEFRKLKYKCEDCVLTFNTQKLMVDHMNGKHKKKGPDSHQCDVCKAYFLTKDNLSTHRSLHLTAYSCVQCEFKTTLKRVILKHCRVHNANSTEYKTCNTCGSVFSSKSKLSYHKGICHQEKPQCDCCGKVFANKMTLKYHLKILPLNKEEKPKEKLFLPCKGCDKIFHSRKSYRAHVVIHDGLTYPCQICGKLFQWKRNLARHMRNHREKDAGALHECRECGKSFSSRDCYNNHMRLSKKHVDEDAYVHECNYCGKKFATKWCMVDHIDWDHLKTIKYQCSFCFKAFKTAKIMVAHVNNLHQGKKKEPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSTAKSFKCKLCPATFTWQTSIYKHMKMMHDNKKKPTRYRDAPPQNKKPEAYTEQANNRTQSFQQNLPTVPNIVNNLVPNIVTNIVSNAFVLGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386177;
- 90% Identity
- iTF_01386177;
- 80% Identity
- -