Smyo006944.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000357.1:477291-482265[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.37 22 6.0 0.2 3 23 191 208 189 208 0.68 2 9 0.00031 0.018 15.7 4.2 2 23 216 238 215 238 0.96 3 9 2.2 1.3e+02 3.5 0.3 3 20 245 259 243 263 0.56 4 9 9.1e-06 0.00053 20.5 0.6 3 23 272 292 270 292 0.98 5 9 0.039 2.3 9.0 0.7 1 23 298 321 298 321 0.96 6 9 0.00037 0.022 15.4 6.9 3 23 329 349 327 349 0.96 7 9 1.2e-05 0.00073 20.1 1.6 1 23 355 377 355 377 0.98 8 9 3.2e-07 1.9e-05 25.1 0.3 1 23 383 405 383 405 0.97 9 9 0.017 0.98 10.2 2.3 1 23 411 434 411 434 0.96
Sequence Information
- Coding Sequence
- ATGGACTTATGCAGAATTTGTCTAACGAACAAGACTCACAAAAAAATAAGTGATCTGAATATGGACATCAATGAAAACACCAATTATTCCCAAGATGTTATGATGTTTTGTTTGGGAATTCAGGTTGAAAGCGATCCAAAAATTAGTACAAAGTTGTGTACGAAATGTTACAAAAAAATTCTATTGTTTTATGAATTTAAAGTTTTAGCATTAAAAAACAATGCTTTCTTGAAAACAGTTAGTGAAAATACATTTTATGAAAATGATTCTTATAATGGTAAGGACGTTATTAAAATAGAGAAAGATTCTTTAGGGGATGCGAATGATGACACCACTGATGTGTCCAAAGAGATATTGGTGAAGGTAAAGGATGAATTTGAAAATGAAGTTAAGGAAGAAGATTCCTTTAGAGAATTTGATTCTGACGATGAAGTGCTTAGTGTTATTAAAATAATTAAACATGAGACCTTGTCTGTGGAATCTACAAAAGAAAATGCACCTGTTAAAAAGAAAAGAGGACGTCCTAAAATACGTGCTATGAAAGAGAAACCTACATCCACTTTGCAGATATGTGATACTTGTGGTAAACCTGTAAAAAATCTAAAGGATCACTTAGAAATTCATAATGCTAATCGTAAGACGATTACTTGTAAGATGTGTGACAAGACATTTAAAACTAAAGGTGCTAAACATAGACATTATAAAATAAAACATTTGGGTATCAAGGGACACTGTAACATCTGCGGCAAAGATGTGGTAGCATTAAAACAACACACATTGTTAGCTCATAACCGTGAGGCACTCCGTTTTGGATGCTCTATGTGTGATCAGAGATTCATTAGCGAGTCAAGTCTGAAGACACACATGATCACTCATTGTAAGGCCCGTCCGTACGAATGTGATATTTGCCGTAATAACTATAGAAGCAAACTAGGACTCGATCAGCACAAGAGGCAAGTGCATGAGAAAGAAAAATCCCATCTTTGTCAATTTTGTTCAAAGAGTTTCTTCAAGAAGTATCATTTACAAGTGCATATACGGAGTCACACTAACGAGAAGCCGTATAAGTGTCCTGATTGTGATAAATCATTTGGCACTGGTTGTATGTTGAAGAATCACAGGCTGATACACAGTGATGTGAAAGCGTTCGCTTGCACCGAGTGTGGGATGCGCTTCTCTAGACCCGGATATCTACGCAACCACATGATAAGTCATACGAAGGAGAAGCGGTACCCGTGTCGATACTGCGCCATGCGATTCGGCCGCTCCGACCACCGCAAGCGCCACGAGTACACCGCGCACGAGAAGCACTCGATGCCCTCCGCCGACACGTGA
- Protein Sequence
- MDLCRICLTNKTHKKISDLNMDINENTNYSQDVMMFCLGIQVESDPKISTKLCTKCYKKILLFYEFKVLALKNNAFLKTVSENTFYENDSYNGKDVIKIEKDSLGDANDDTTDVSKEILVKVKDEFENEVKEEDSFREFDSDDEVLSVIKIIKHETLSVESTKENAPVKKKRGRPKIRAMKEKPTSTLQICDTCGKPVKNLKDHLEIHNANRKTITCKMCDKTFKTKGAKHRHYKIKHLGIKGHCNICGKDVVALKQHTLLAHNREALRFGCSMCDQRFISESSLKTHMITHCKARPYECDICRNNYRSKLGLDQHKRQVHEKEKSHLCQFCSKSFFKKYHLQVHIRSHTNEKPYKCPDCDKSFGTGCMLKNHRLIHSDVKAFACTECGMRFSRPGYLRNHMISHTKEKRYPCRYCAMRFGRSDHRKRHEYTAHEKHSMPSADT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386172; iTF_01388861; iTF_01387077;
- 90% Identity
- iTF_01388861;
- 80% Identity
- -