Smyo005356.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000267.1:100977-104458[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.9e-06 0.00052 20.5 0.7 1 23 276 298 276 298 0.98 2 12 1.2 71 4.4 0.8 5 16 472 483 470 490 0.85 3 12 0.00092 0.054 14.2 2.2 1 23 499 522 499 522 0.97 4 12 0.002 0.12 13.1 1.1 1 23 527 549 527 549 0.97 5 12 2.1 1.3e+02 3.6 4.0 2 23 571 593 570 593 0.88 6 12 0.0094 0.55 11.0 0.9 1 23 597 620 597 620 0.96 7 12 0.57 33 5.4 0.4 2 23 643 665 642 665 0.90 8 12 1e-06 5.9e-05 23.5 0.9 1 23 673 695 673 696 0.96 9 12 0.0027 0.16 12.7 0.9 2 23 712 733 711 733 0.96 10 12 0.0046 0.27 12.0 0.3 1 23 739 761 739 761 0.96 11 12 1.1 66 4.5 4.8 1 22 767 788 767 791 0.90 12 12 0.0013 0.074 13.7 0.1 2 23 840 861 839 861 0.96
Sequence Information
- Coding Sequence
- ATGGATTCAGAGAATGGCCCAATTGTCTTAGAACAAATAAAATCCAACACACAAGATGGAGAATTTGAAAATATGCCTATAAAACAAGAGACAGACAACAACTTGGTCATTGAGGAGAATAATGTTGAAATGCAAATAAAAATGGAAACTGAGAAAACACTCGATGACAATCCCTTTGAAAATATACAATTGGAAGTGAAACAGGAGTTAGAGATTGTTGAAAATGATAACAGTATGGAGTATGATCATATGAAGGACATTGGTGAGGATAAAACTCTGGATAATATGAATGATAAGTCAGCAGTTCTTGATGTGAAACAAGAAGTAAGCGATGGGATGGAGTCGTGTGATTATGGAGATTTTGACGGAGTCAGTTTAGACAGTAGGGATGCATCTGTTCTTGGTAACGTTGAAGCCTGTCTGCATGAAGATTTGGATATGATAAAGAATGAAGATGTTTACGGGGTGGTCCAACAAATGAAAGACTACGACATCAAACAAGAATCCGACATTACTGTGACTGAAACACATTTGATATCAAACAAGCTCATAAACACGACATCAACAATTACACATCCCCAGGACGGAATGATAGAATCGCAAACAACAAAAACACTGGTCATGGAAGTGTTGCCAATAACTCATACCGCTTTGTCCAAAATGGGGAATCCCGAGGAAATCCTCCCGACGTCATACGACAATGAGCTCTTTAGTTATAAAGATTCATTCCAATTGAATTCAATAACCGGGAATTGTTTGTCTCTGGAGCAAGAGGCGTTTGATCTACTGAAAACAAAAGGAAAAGTGAATATAATTGGGAAAAGTTATGAATGCCTAAAATGTCCCAAAACTTATAATTCATCGGCCAGCCTGAGAAGGCACAGATTAGTTCACGATTGTATTGAGAGAAGAGAGCTGGGACTGAAAAAGGGTAGGGAGAATAGAAAGAAAGCGCGCGAGAAAAAACTTAAAGAGGTCAAAATTAAGGGGCACAAAACAGTTAAGCCCAAAACGCGTAAAGATAACTCAGAAAATCCCAATGAAACTAAGGATATATCAAATAAACCAAGAACTAGTAAATTTAAATCAATTAAATTAAAAGAGAGTAAAGATGAATTAAACTCGCCTCAAGATGGTAAAGTTAAATCGATTAAATCAAAAGAAATTAAAGATGAATTAAACTCATCTAAAGACGGTAAAGTTAAATCGAGTAAAGATGAATTAAACATGCCTAAAAATATTAAAGACCCTTCATTAGTGACAAACAGAGAGAAAAGAAAGAGGGCACGCGAAAGACTTCGAGAATTGTCTGAGGGTTTTAAAGTTAATAAATTAAAATTAAAAATAAGAAGGAGCGATATAAAAGATTGTAAAGATATAAAACCGGAAGTTAAAAAGGAGGGATACGAATGCACTTGCGGCAAGTCTTTCAAGAGACGTACTCTAATGGAAACTTGCCTCAGATCACACAATCTATTCGAAGATGACCTGAATTATTCTTGCGTGACCTGCGCCAAACAGTTCAGACACAGTGCAGAATTGAAGCTACACAGAAAAAGAGCTCACAGCAAAAAGAGATTCGCCTGCAAATTCTGTCCGACAGACTATATGACTAGAAAAGAACTGTTTAGACACCTGCAAATACATCAGAAAGTTCAACTGATGGAATACAAAGTGATATCAGAAGTTGTCAAGGGCAAACAGAAACTAAAGTGTTTTATGTGCTCGAAAACTTGCAGTGAATTGTCTGAGTTAAAATGTCACGTTATGGACGATCATAAAGAGCCTTATATATGTCCGCATTGCAAGGAGACATTTCCGAAAATCATTGCGTTCGGCAATCATACGAAAACATCGCACCCAGAAGTCGAAGGCCAATCGGTTTTGGATGTCTTGGAGGCTTTTTCCAAATTGGTTCGAGCTTGGAAATGTGAGGAGTGCGAATTACAATTTCACGAAGCAGATAAACTGGCTTTACATAAAATAGAGAAGCACAGTCCTGATGTTAAAGCGAAATTTCAATGTCCAGATTGCCAACGTATGTTCGCAAGTCAACCAGGATTGAAATCCCATCAAAGAATACACCATAGGAGTCAAGAGGAGGAAACCACTGAATTGGTAGAAAAGGGTATCATGTGTTTGGAATGCAGGAAAATGTGCGATGATATGGACGCCTTGACTTCCCACATGAGGTTGCATTCCTCGGAGAGAAAGTATCCGTGTAAATATTGCGAATTTCGCTTTGCAACGCCGGAAAAGAGGAAAGCTCACGCAGAAATACACACGGGCGATATGAAATATGTGTGTTTCATTTGCGAATATCAATGCAGTTCGGAGAATCGTTTGAAACATCACAAGAATTCGATAAAACATCTAAACATGAAGGAGTATCTGTTGACCGGGAAGAATATGTTCGAGGAGCAATCAACTGTCCAAGAATCTCCAGACACCAAGAAGGTGAGTAGCAGCAGAAAGAGGAAGAAAAGTGAGAGTGAAAGTGAGGTGGAAAGTGATGTTTCCTGTGAAATTTGTGGGGAAAAGTTTCCAGATGAAAGTACAATGCTCGAACACAAACAAATACATCCGTTCATTGAATTCCCAAACGACGATAAACATACGCGAATATTCTTTAAATGA
- Protein Sequence
- MDSENGPIVLEQIKSNTQDGEFENMPIKQETDNNLVIEENNVEMQIKMETEKTLDDNPFENIQLEVKQELEIVENDNSMEYDHMKDIGEDKTLDNMNDKSAVLDVKQEVSDGMESCDYGDFDGVSLDSRDASVLGNVEACLHEDLDMIKNEDVYGVVQQMKDYDIKQESDITVTETHLISNKLINTTSTITHPQDGMIESQTTKTLVMEVLPITHTALSKMGNPEEILPTSYDNELFSYKDSFQLNSITGNCLSLEQEAFDLLKTKGKVNIIGKSYECLKCPKTYNSSASLRRHRLVHDCIERRELGLKKGRENRKKAREKKLKEVKIKGHKTVKPKTRKDNSENPNETKDISNKPRTSKFKSIKLKESKDELNSPQDGKVKSIKSKEIKDELNSSKDGKVKSSKDELNMPKNIKDPSLVTNREKRKRARERLRELSEGFKVNKLKLKIRRSDIKDCKDIKPEVKKEGYECTCGKSFKRRTLMETCLRSHNLFEDDLNYSCVTCAKQFRHSAELKLHRKRAHSKKRFACKFCPTDYMTRKELFRHLQIHQKVQLMEYKVISEVVKGKQKLKCFMCSKTCSELSELKCHVMDDHKEPYICPHCKETFPKIIAFGNHTKTSHPEVEGQSVLDVLEAFSKLVRAWKCEECELQFHEADKLALHKIEKHSPDVKAKFQCPDCQRMFASQPGLKSHQRIHHRSQEEETTELVEKGIMCLECRKMCDDMDALTSHMRLHSSERKYPCKYCEFRFATPEKRKAHAEIHTGDMKYVCFICEYQCSSENRLKHHKNSIKHLNMKEYLLTGKNMFEEQSTVQESPDTKKVSSSRKRKKSESESEVESDVSCEICGEKFPDESTMLEHKQIHPFIEFPNDDKHTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386161; iTF_01387068; iTF_01388892;
- 90% Identity
- iTF_01388892;
- 80% Identity
- -