Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010001342.1:74489-76324[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.037 2.2 9.1 0.0 3 23 98 119 96 119 0.94

2 15 0.026 1.5 9.6 1.8 2 23 140 162 139 162 0.94

3 15 0.058 3.4 8.5 6.9 1 23 167 190 167 190 0.95

4 15 0.12 7.1 7.5 0.3 1 23 195 218 195 218 0.92

5 15 0.24 14 6.5 0.6 2 23 221 243 220 243 0.94

6 15 0.17 10 7.0 1.2 2 20 250 268 246 270 0.89

7 15 0.00096 0.056 14.1 2.4 1 23 313 336 313 336 0.91

8 15 0.35 21 6.0 0.2 2 23 365 387 364 387 0.94

9 15 0.00011 0.0063 17.1 0.3 1 22 409 430 409 432 0.90

10 15 3.9e-05 0.0023 18.5 0.2 3 23 439 460 438 460 0.96

11 15 0.00075 0.044 14.5 0.8 2 23 466 488 465 488 0.94

12 15 0.038 2.2 9.1 0.9 1 23 493 516 493 516 0.95

13 15 0.00027 0.016 15.8 4.2 1 23 520 543 520 543 0.97

14 15 0.005 0.29 11.9 2.3 2 23 550 571 549 571 0.96

15 15 0.016 0.92 10.3 2.5 1 23 577 599 577 599 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.037	2.2	9.1	0.0	3	23	98	119	96	119	0.94
2	15	0.026	1.5	9.6	1.8	2	23	140	162	139	162	0.94
3	15	0.058	3.4	8.5	6.9	1	23	167	190	167	190	0.95
4	15	0.12	7.1	7.5	0.3	1	23	195	218	195	218	0.92
5	15	0.24	14	6.5	0.6	2	23	221	243	220	243	0.94
6	15	0.17	10	7.0	1.2	2	20	250	268	246	270	0.89
7	15	0.00096	0.056	14.1	2.4	1	23	313	336	313	336	0.91
8	15	0.35	21	6.0	0.2	2	23	365	387	364	387	0.94
9	15	0.00011	0.0063	17.1	0.3	1	22	409	430	409	432	0.90
10	15	3.9e-05	0.0023	18.5	0.2	3	23	439	460	438	460	0.96
11	15	0.00075	0.044	14.5	0.8	2	23	466	488	465	488	0.94
12	15	0.038	2.2	9.1	0.9	1	23	493	516	493	516	0.95
13	15	0.00027	0.016	15.8	4.2	1	23	520	543	520	543	0.97
14	15	0.005	0.29	11.9	2.3	2	23	550	571	549	571	0.96
15	15	0.016	0.92	10.3	2.5	1	23	577	599	577	599	0.96

Sequence Information

Coding Sequence: ATGGATGCCAGAAAGTCGTTACAGAAAAGCGTTTCCTTTTCAGATGAAAACGACCATGCATCTGGCTATGAAAAGAGGAGGACAAATCTGGAAATTTTGTTCAACTATACAACATTGATACCCTTTAAATGGCGTTCGAAGTATTTGTGTTTTCACTGTTGCACTGACGTAGAGTATAGAGAGTTGAGAGACCATACCAAATCTCATGGACACTGCACGTCAAATGACAAAGCCATAAGAGACGTGAAAGGAAAAGATGTCGAAGTTAAAATAGACGTTTCACACATTGCTTGTGAAATATGCAATGAGCCTTTTGAAAATTTCGATGAAATCATAGATCATTTGATCGTTAAACATAAATTGCCTTATAACAAGAACGCAGAATTGACTCTACAGCCGTATAGATTGGTAGATTTAAAGTGTTTGCTATGCGACGAACATTTTAACTTCTTCAGCAAATTAATAGTTCACGTGAACAATAAACATCCGAAACACGAGTTTCGTTGTGATTTTTGTAAACATACTTTCAATAAGAAAAGGGATTTGGCCGCGCATTGTAGAATGTATCACAAGGAGGACGGTTATAATTGTGAGGAGTGCTTATTGAACTTTGCATCAGTGAATAGCTTGAGAAGTCATAACACTTCCGTTCATCCGTCGATGTGTAACATTTGCTTTAACTCGTATCCAACGGTAAGGAATAAATTGCGGCACATAAAACTCGATCATAACGGACAATGTCCGGTTAAATGCGGGTTTTGTTTGAAACTATTTAGCACAAATAAGAGTTTTGTCAAACACGCCGAGTCATGTACCAAGGAATTATCTAAAGATGGAGAAGATGTGGGTAAAACGCAAATCAAGCAGATACGAAACAATTTAGCATGTTTACTAAACATGTCTACCGTTATACCGTTTAAGAATTTTTTGAATAGGTTTCGGTGCTTTTATTGTCCTAAAGATTTCACTGAATGCTCAGAACTAAAAGAGCACACTGTGCTAGAACATCCGCATTGTGATATTAAGTTGAAAAGTATGAAATTAAGGAATAGAGCCAGACACGAGGGAGTTAAAGTTGATGTGTCCTCTCTATCGTGTAAAGTGTGCTGTGAAAGTTTTGATGAATTGGATCTCCTTATCGATCATCTAATCGTTGAGCACAACGCTCGATACAATAAAGCTGTTGATCTGAGCTTGTTGCCATACAAGTTAATTAAAGATAATTATCCGTGTCCATATTGCAGCGAAGTGTTTAGATACTTTAGCACTTTATTAAGGCACGTGGGCCTCAGTCATACGGACAATAGAAACCTTTGCGTTTATTGTGGCAAATCCTTTAGAACAGACGCGAGTCTGAGGGTTCATATAGCTTCGTATCACAAAACAAAAAGAATTAAATGCCCCAATTGCTCTATCCGATTCACTACCAATAACGCTCTGCATTCCCATCTAGGAAAAGCGCACGGCAAAAAAATATTCAGATGTTCGAAGTGTTCAGAGAAATTTGTATCAGATTATGCAAAGTTGAAGCATCTGATTGTCACTCATGGTTCGGGACACAAATGCGAATACTGTGGCAAGTTGTTTACCAAGAAATCCTTCATGGTGAATCACGTCAGACGCACTCATTTGAAGGAGAAGAATGTCGAGTGCTCTGTTTGTCACGAGAGATTCTTCGACGTACACTTACTTAAAATGCATATGGTAAAGCATATGGGTGTTAGGAATTTTCATTGCGATATTTGCGGGAAGAAGTTTCTGTGGAAGAAAAATTTACGTGGTCACATGACTTCACATTTGAAAGACATTGCGCCATTTCAAACTGTAACTCAGTGA
Protein Sequence: MDARKSLQKSVSFSDENDHASGYEKRRTNLEILFNYTTLIPFKWRSKYLCFHCCTDVEYRELRDHTKSHGHCTSNDKAIRDVKGKDVEVKIDVSHIACEICNEPFENFDEIIDHLIVKHKLPYNKNAELTLQPYRLVDLKCLLCDEHFNFFSKLIVHVNNKHPKHEFRCDFCKHTFNKKRDLAAHCRMYHKEDGYNCEECLLNFASVNSLRSHNTSVHPSMCNICFNSYPTVRNKLRHIKLDHNGQCPVKCGFCLKLFSTNKSFVKHAESCTKELSKDGEDVGKTQIKQIRNNLACLLNMSTVIPFKNFLNRFRCFYCPKDFTECSELKEHTVLEHPHCDIKLKSMKLRNRARHEGVKVDVSSLSCKVCCESFDELDLLIDHLIVEHNARYNKAVDLSLLPYKLIKDNYPCPYCSEVFRYFSTLLRHVGLSHTDNRNLCVYCGKSFRTDASLRVHIASYHKTKRIKCPNCSIRFTTNNALHSHLGKAHGKKIFRCSKCSEKFVSDYAKLKHLIVTHGSGHKCEYCGKLFTKKSFMVNHVRRTHLKEKNVECSVCHERFFDVHLLKMHMVKHMGVRNFHCDICGKKFLWKKNLRGHMTSHLKDIAPFQTVTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -