Smyo006845.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000351.1:285268-289941[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.082 4.8 8.0 0.4 1 23 213 235 213 235 0.96 2 10 0.15 8.7 7.2 0.3 2 19 263 280 262 282 0.95 3 10 9.8e-05 0.0057 17.2 0.2 3 23 306 326 304 326 0.96 4 10 2.5e-06 0.00015 22.2 0.2 1 23 330 352 330 352 0.98 5 10 0.02 1.2 9.9 0.3 1 23 357 380 357 380 0.94 6 10 0.83 48 4.9 0.3 1 23 386 409 386 409 0.91 7 10 6.4e-06 0.00037 21.0 0.8 1 23 416 439 416 439 0.98 8 10 9e-05 0.0052 17.4 1.6 1 23 445 467 445 467 0.98 9 10 4.9e-06 0.00029 21.3 3.6 1 23 473 495 473 495 0.98 10 10 1.7e-06 0.0001 22.8 1.0 1 23 501 523 501 523 0.98
Sequence Information
- Coding Sequence
- ATGGAGTCGAATATAGTTGTAGTGTCGCTACCAATGCACGATATGTGTACATTGTGTCTTAAAGTTGGTGCAGTTAAGAACATGTTTCTTTCTTACGGAGACGATAACACTAAAGAAGTGTATTCGGAAATGTTGAAAAATTGTTACTCAATAGATATTGCAACATTGGAACTCCGTGACAGGAAACCGTTGATATGCATGTCTTGTATAAACAAATTGAGAGCCGCAGTCAGGTTTCGGAAGATGGTGGAAGAATCCATTAAGAATCTACAGGGTGTTCAGGATATAAAAATACAGCATTGTAACAGTTTTGTCCGACCAAACAAAGCATCCTACGGCATTGATGTAGATGACAATAATGATGTCGACGAGGACTTTGCAGCTGATGAAGATGTTAAGAAGGAAAAGGTTGAAGGTTTCGCCGATGGACCGAGCGATGTCGACGATGATAACGAAGCCGACGAGGACTATGTACCTGATGATGAAGATATAAAAAAAGACATAAAAGAAGAGGACGCGAAGAGAGCGAAGAAATCTCACTCAGTTTTAAAGTACATGAAGAAGCAAAACTTCACCGAGACAGAAATTATGCTAAAATCTGGTCTGTTTCCATTCAAAATGAAGAAGAATCAATTGTACACTTGCGCCGTTTGCTCAGAGGCGTACAGTTGTCTCGACGAGTTAAAAAGTCACGTGATGGATCACAACAAGAAGAATATACACAAGGCTTTCAAGAAAATGCTCCTATCGAACCTACACAGCTATTACAAGTCCGACACGTGCCTAAGGTGTAAAGTTTGCACAACAGACGTGAAAAATTACGATGAACTGAAGAGTCACAACGACAATTGCTCAAGAATGAAGGGGAACAAGTGGAATCGTTtgccattcaaattggaaaaagatcaactagattgtcccgtgtgtgaaaagacgtttttgaattacgtaaatctgaatacgcacatgaacgtgcactatcccaattacatatgcgagagttgcggcaaggctttcgcgtctaaagcgaggttgcgtggtcacatgaggacgcacgaagtcggcgtgttcccttgtaaatattgcggggcaattttcgatagagtgactaagagagagaaccacgtgtccaaagagcacaaggctggcgttaggtacgcgtgtaaacgttgcaagataacgctgccatcattttacgcgagacagaaacacttggccgaagtacacgacgaggaactgaagaggtacaagtgcaaagtttgcccgcaaagttacataacgcccggacacttgtcgagccacgtgcgcagggatcatttgaacgagaggaatcaccagtgcgaacagtgcgagttggcgttttacactaaaaacgccctcaaaatgcacatgataaagcacgacggcgagaggatacacgtgtgcaacatatgccaaaagtcgtatcaaaggaagaagacactgaaagagcacatgagaattcacaataacgataagaggttcgtgtgtcccgtttgcggtagggcgttcacgcaaaagtgcacgctaaagggacacctcaaggttcacGATCGCAAGTTGGACGTGGAGTTGACAGTTTTGGAAACTCTCCATTCAATATAG
- Protein Sequence
- MESNIVVVSLPMHDMCTLCLKVGAVKNMFLSYGDDNTKEVYSEMLKNCYSIDIATLELRDRKPLICMSCINKLRAAVRFRKMVEESIKNLQGVQDIKIQHCNSFVRPNKASYGIDVDDNNDVDEDFAADEDVKKEKVEGFADGPSDVDDDNEADEDYVPDDEDIKKDIKEEDAKRAKKSHSVLKYMKKQNFTETEIMLKSGLFPFKMKKNQLYTCAVCSEAYSCLDELKSHVMDHNKKNIHKAFKKMLLSNLHSYYKSDTCLRCKVCTTDVKNYDELKSHNDNCSRMKGNKWNRLPFKLEKDQLDCPVCEKTFLNYVNLNTHMNVHYPNYICESCGKAFASKARLRGHMRTHEVGVFPCKYCGAIFDRVTKRENHVSKEHKAGVRYACKRCKITLPSFYARQKHLAEVHDEELKRYKCKVCPQSYITPGHLSSHVRRDHLNERNHQCEQCELAFYTKNALKMHMIKHDGERIHVCNICQKSYQRKKTLKEHMRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHDRKLDVELTVLETLHSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386094; iTF_01388828;
- 90% Identity
- iTF_01386094;
- 80% Identity
- -