Smyo008533.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000452.1:100313-109059[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.064 3.7 8.4 4.8 1 23 336 358 336 358 0.98 2 17 0.0014 0.083 13.6 3.1 2 23 363 384 362 384 0.96 3 17 0.00068 0.04 14.6 0.2 1 23 389 412 389 412 0.96 4 17 1.6 94 4.0 1.5 2 23 418 440 417 440 0.92 5 17 0.00013 0.0074 16.9 1.5 1 23 446 469 446 469 0.97 6 17 2e-05 0.0012 19.4 1.7 2 23 475 496 474 496 0.97 7 17 0.00022 0.013 16.1 3.6 1 23 502 524 502 524 0.98 8 17 2 1.2e+02 3.7 3.2 1 23 579 601 579 602 0.82 9 17 3.9 2.3e+02 2.7 2.0 2 23 629 651 628 651 0.91 10 17 0.00034 0.02 15.5 3.6 2 23 678 699 677 699 0.96 11 17 0.00078 0.045 14.4 3.6 1 23 703 725 703 725 0.97 12 17 6.1e-05 0.0036 17.9 0.5 2 23 731 753 730 753 0.96 13 17 0.01 0.6 10.9 0.6 1 23 758 781 758 781 0.90 14 17 2.4e-05 0.0014 19.2 0.3 1 23 788 811 788 811 0.97 15 17 0.093 5.5 7.9 0.2 1 21 817 837 817 839 0.76 16 17 0.0027 0.15 12.7 2.8 1 23 845 867 845 867 0.96 17 17 0.00096 0.056 14.1 4.1 1 23 873 895 873 896 0.96
Sequence Information
- Coding Sequence
- ATGGATTTGGACAACATACAGAGTTGGGCTTTACAGCCAGATGTGTGCAGGTGTTGTCTGTCAACTAACGGCAAATTTGATATGACCGCATCATATTTATCGGAAAACGGAATCAAAGAAGTCTACTCCGATATGCTACGAGAATGTTACGGTATTACTTTATCCTATCTCACCGGATGGGGACCAAGCCGATTGGTTTGCAGCCTTTGCATTGGGCATCTCCGAGATGCATCTAGTTTTCGTAAGCAAGTGTTGCAAGCTGAAAAACACTTTGTATATTACTGTAGTAAAAGAGAAGGGTCTGAAGAAGTGCGAATAAAGAGTGAGACTGAACTGGATGGCTCCGAGTTGTGTCACAATGAACCTTTACAGACTGATGATGACAAAACTACCCTCGATAGAACCACAGAGAGAACAGTTAGAAAGAGAAGGAAAATAATAAAACGCAAGAGAGAGGAAGATGACTCGGATTCTGATACTCCCATTGCGAGGTTGTCAAAGAAAAATACACCTTCTGTAGAAGCGGATAAAGCTCATAATCAAGCGGACGTTTTGAATAAATCGAAGGAAATAAATGAAAAGGAATATAATGAAGACCAATTTACGAATAAAGGGCAACAGCGCTCGGCGCACAAAAATGGCGTCAAAACTGTCTCGGAACGGAAACGCGTAATGGTCACGTGTGACATTGTGCTCAAAGACACGACCGCTTGCCCTTTTAGGCACCACAAGAGTTGGTTCCAATGTTTCTTCTGTCCCGATGACTTCATGGAAATAAATATATTAAGACAGCACACTTTAATGCAACATTCGAACATAGACGAGGAACTGAAGAAGATAAAACGCTACCCGCGTTCGCTTCAAATTGAAATTTCAAATTTGGAATGTCGCGAGTGCCGTTTGAATTTGGAAGACGTGAATTCGATGCGTTCACATTTAGAGGTTGAGCACAAGAAGGTTATATACACTGAGTGCATAGCCGATTACAAGGTGAACGCGAGTCCGTACACTTGTCACATTTGTAAGTTGGAGTTTcacgtgtttagaactctaacgacgcatttgaacgagcattacgcaaattgcatatgcgatgtgtgcggTAAATCGTTTTTAAACTCAAAACGTTTAAAAGTGCACAAAAGGACACACGAAAATGGTCAATTTCCTTGTACGGAGTGCGGTAAAATACTCAAAACGAAAACTTCCAGGGCGAATCACATGGAGAGCGCGCACTCTAAGCGCGTTCTCAAATGTCAGATTTGCTACAAACCCATGAAACATTACAACGACAGGATAAAACACATGTCGGACGTTCACAACATAACGCACAAATTTAAATGTCCCATATGCGATCGCGAATACAATATAAAACACTATCTGGCTACCCACATAAGACAAACTCACGGACACAAGAATAAAAAGTGTTTGGAGTGCGGCATGGCGTTCGTTACCAATCACGGGCTGAAGAAGCACATGTTGAAGCATAGCGGTCAAAAACCGTACAGTTGTAACAtgtgttgcaagtcgtacgcgagaagttatactctgagggagcatatgagagtgcacgatagtgaaaggcggtttgcGGGCCCATTGCGGATTGTAAAATCGAAAAAATCCAAAACAATCGCCGAGAGTTACGTAGACAACAAATGTTTGCGGTCGAACATAACTCTGTTGTTAAAAAACTCAACAATAATACCTTTCAAACACACGAATAATACGAAATACGTGTGTTTCTACTGTGAAAAATCTTTTCTATTTTTCAACAAACTAAGGGGCCACGTTACCGAACATCATTTAAATATTACCGAAGGTGATATAATCACGCGTTTAAAAACTCCAAAGGATCTAATTAAAGCCGACATAAGCGAAATAGTGTGTAGATTATGCGGGAAAAAACATAAAAATATTGAAGAATTTATTGCGCATTTGACACATTTCCACAGGAAAGTATATTTTCAAAATGCACGTTTCAAACCGTCCCACGGAATTTTGGGTTTCGATCTCAGTTGCGAGACTTTAAAATGTCACGTGTGCAAAAAAGAGTTTAGATTTTTCAGAAACCTCTCCGTCCACATGAACGAGCACAGCGATTATTTTATGTGCCATTTTTGCGGTAAAAAATTCGTCTCCGATCACAGACTGCAAACCCACATCGCCGTTCATAGACAAAGTGAAATACGGTGTAAAGTTTGCGGTAAAGATTTCCGAACGCCATCGGCACGGAGTTACCATATACGAAAAATACACAACGACTCGAAATTCAAGTGTCCAGAGTGTCTCGAGGTTTTCTCACAGTACAATCAGCGTTTGAAACATTTAGTCGAGAGACACGATATTAAAAAACCTGATTTTAAATGTGACTTGTGTACGAGAGAGTTCGCTAGTTCTGGTGGGTTGAGAGCACACATACGCTACTCCCATTTGAAAAATAAAGAGTTCTCCTGTGATGTTTGTGGCAAAGTTTTTCTTTACAAATGGATATGGCAAAGACACATAGATGCGCACAGTGGTATAAAAAAATACGAGTGCATATACTGCCACAAGAAATTCGGAAAACCGTACACGCTGAAGATTCATACAAAGATACATTTGAACGATAAGAGTTTCGTATGCAGCGTGTGCAAAGCTGCGTTTGTGCAGAAATGTAGTTTAAAAAATCATTTTAGAGTTCATCACGCCGGTGCTGATGTAGATTTGAGTAAATTGTAG
- Protein Sequence
- MDLDNIQSWALQPDVCRCCLSTNGKFDMTASYLSENGIKEVYSDMLRECYGITLSYLTGWGPSRLVCSLCIGHLRDASSFRKQVLQAEKHFVYYCSKREGSEEVRIKSETELDGSELCHNEPLQTDDDKTTLDRTTERTVRKRRKIIKRKREEDDSDSDTPIARLSKKNTPSVEADKAHNQADVLNKSKEINEKEYNEDQFTNKGQQRSAHKNGVKTVSERKRVMVTCDIVLKDTTACPFRHHKSWFQCFFCPDDFMEINILRQHTLMQHSNIDEELKKIKRYPRSLQIEISNLECRECRLNLEDVNSMRSHLEVEHKKVIYTECIADYKVNASPYTCHICKLEFHVFRTLTTHLNEHYANCICDVCGKSFLNSKRLKVHKRTHENGQFPCTECGKILKTKTSRANHMESAHSKRVLKCQICYKPMKHYNDRIKHMSDVHNITHKFKCPICDREYNIKHYLATHIRQTHGHKNKKCLECGMAFVTNHGLKKHMLKHSGQKPYSCNMCCKSYARSYTLREHMRVHDSERRFAGPLRIVKSKKSKTIAESYVDNKCLRSNITLLLKNSTIIPFKHTNNTKYVCFYCEKSFLFFNKLRGHVTEHHLNITEGDIITRLKTPKDLIKADISEIVCRLCGKKHKNIEEFIAHLTHFHRKVYFQNARFKPSHGILGFDLSCETLKCHVCKKEFRFFRNLSVHMNEHSDYFMCHFCGKKFVSDHRLQTHIAVHRQSEIRCKVCGKDFRTPSARSYHIRKIHNDSKFKCPECLEVFSQYNQRLKHLVERHDIKKPDFKCDLCTREFASSGGLRAHIRYSHLKNKEFSCDVCGKVFLYKWIWQRHIDAHSGIKKYECIYCHKKFGKPYTLKIHTKIHLNDKSFVCSVCKAAFVQKCSLKNHFRVHHAGADVDLSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -