Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010001603.1:18444-22158[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9.3e-05 0.0054 17.3 0.0 1 23 239 262 239 262 0.95

2 9 0.0044 0.26 12.0 3.2 1 23 333 355 333 355 0.98

3 9 4.1e-05 0.0024 18.4 1.2 1 23 359 381 359 381 0.98

4 9 0.0042 0.25 12.1 5.1 1 23 386 409 386 409 0.95

5 9 0.00053 0.031 14.9 0.3 3 23 418 439 416 439 0.95

6 9 3.3e-05 0.0019 18.7 3.5 1 23 445 468 445 468 0.98

7 9 2.4e-06 0.00014 22.3 1.5 1 23 474 496 474 496 0.98

8 9 7.8e-08 4.6e-06 27.0 1.4 1 23 502 524 502 524 0.99

9 9 1.2e-05 0.00073 20.0 3.0 1 23 530 553 530 553 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9.3e-05	0.0054	17.3	0.0	1	23	239	262	239	262	0.95
2	9	0.0044	0.26	12.0	3.2	1	23	333	355	333	355	0.98
3	9	4.1e-05	0.0024	18.4	1.2	1	23	359	381	359	381	0.98
4	9	0.0042	0.25	12.1	5.1	1	23	386	409	386	409	0.95
5	9	0.00053	0.031	14.9	0.3	3	23	418	439	416	439	0.95
6	9	3.3e-05	0.0019	18.7	3.5	1	23	445	468	445	468	0.98
7	9	2.4e-06	0.00014	22.3	1.5	1	23	474	496	474	496	0.98
8	9	7.8e-08	4.6e-06	27.0	1.4	1	23	502	524	502	524	0.99
9	9	1.2e-05	0.00073	20.0	3.0	1	23	530	553	530	553	0.97

Sequence Information

Coding Sequence: ATGGAAACGAATAACGTTTGCCGATGTTGTCTGGCCCAAGGGCCGCATAAAGATTTAAATTTAACATATATCTGGATGGATGAAAAAGAAATATATTCGGAAATGTTACTCGAATGCTTTAATATAACACTATCACCAGAGAATGCTTCAAACAACATATGCGAATGTTGTGTCGATGCATTAAGAAACTCGTTGACATTCAAGCGTCGGGTGCTTCAGTCTGAACAGGAACTCTTCAGTAGGTTAAAGGAAGATGAGAACCTCACCGAAGTCAAAATTGAACCGTTGGTCGACAGCGAGAACGATTCAAATGGAGATTCAGATTTTTCTATTGACACAATTATAAAAAACGAGGCCATAGAGCATAGTGGTAAAAGGAACGGTCAAAAAAAGAAAAATGGGAAACAATTAAAGATTCCCACAAAGCCTCCTTACGGCGAATGGAAAGTTAATAAAATCAAGTCTTTAGTTTCAAAATTTGTCACCGGTATTGATTCAACAGAGTTCCCAGATTTGACAGTGAAGAAGTCCAGCATAAAGGACAGTATTAAGAGCAAATCTCGAAAAATACTAATAAAAAAGGAGCCTAAAGAGAAACTGACCAAAGTGATATGGTCGTCGAAGGCCAACGACAAGAAAAAGCATAGACACAATCTACAGAAtatattgaaattttcaaacgcgacaccattcaaaaacaaatctctcctcggttacatttgcggttactgcgaagcaacatttccagatccgacaaatttgagatctcacacggaggtggatcacaaaaatgagagattaaatttcaaaaccaccttcgacatgacagatttcaacgtcaacttggacataacggatttgacgtgtaccctctgcgacgatagaatagagaatttgtcaattttcaaagagcatttggttaaaaatcatcagaaattcttccacgatgacataaaagatcatgtacttcaattcaagttggagaaaagcgaagtgtacaattgcactatgtgcacgtcaacgtacgaaaccttcaaaatgcttaaacagcacatgaataagcactattgcaattatatgtgtaacatgtgcgattcatcgttcgcaacgaagaggtctttgaacgcacacaagacaacacatctggagggtagtttcaaatgtgaatattgcgataaggttttctccagtcgtccaaagaaacattatcacgagaaaacaaaacatttgggtgctagaagtataagcaattgtccgtactgcgatgaaccgttccgcagttactatcagaggaatcagcatttgatcaaagttcacaacacagaagctaaatacaagtgcaatatatgcgataaaacgtacattttgaagtccctactgatgtatcatataaagaagtgtcacctgatggagagaaactttcagtgtaccgagtgcggttataggtttttcagcaagaaagccttgaaggctcacatggtgaagcacacgggcgaaaggaactataagtgtgaagtgtgcaacaagtcgtacgcccggaagtatacgttgagggagcacatgaggattcataataacgatagacgtttcaagtgtagcgtgtgcggcacttcgtttgtgcaaaagtgtagtctgaagagtcatctgttgtcgaatcacggGATTAGTATGTCAGCAGGTGATATAACCAGTTCGGTGTGA
Protein Sequence: METNNVCRCCLAQGPHKDLNLTYIWMDEKEIYSEMLLECFNITLSPENASNNICECCVDALRNSLTFKRRVLQSEQELFSRLKEDENLTEVKIEPLVDSENDSNGDSDFSIDTIIKNEAIEHSGKRNGQKKKNGKQLKIPTKPPYGEWKVNKIKSLVSKFVTGIDSTEFPDLTVKKSSIKDSIKSKSRKILIKKEPKEKLTKVIWSSKANDKKKHRHNLQNILKFSNATPFKNKSLLGYICGYCEATFPDPTNLRSHTEVDHKNERLNFKTTFDMTDFNVNLDITDLTCTLCDDRIENLSIFKEHLVKNHQKFFHDDIKDHVLQFKLEKSEVYNCTMCTSTYETFKMLKQHMNKHYCNYMCNMCDSSFATKRSLNAHKTTHLEGSFKCEYCDKVFSSRPKKHYHEKTKHLGARSISNCPYCDEPFRSYYQRNQHLIKVHNTEAKYKCNICDKTYILKSLLMYHIKKCHLMERNFQCTECGYRFFSKKALKAHMVKHTGERNYKCEVCNKSYARKYTLREHMRIHNNDRRFKCSVCGTSFVQKCSLKSHLLSNHGISMSAGDITSSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386974;
90% Identity: iTF_01388778;
80% Identity: -