Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010001100.1:42904-54037[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.071 4.1 8.2 4.0 1 23 211 233 211 233 0.99

2 11 1.3e-05 0.00079 19.9 1.4 1 23 239 261 239 261 0.98

3 11 0.00018 0.011 16.4 2.1 1 23 267 290 267 290 0.95

4 11 0.038 2.2 9.1 3.2 1 21 296 316 296 318 0.95

5 11 0.00012 0.007 17.0 2.7 1 23 324 346 324 346 0.99

6 11 8e-06 0.00047 20.7 4.1 1 23 352 374 352 374 0.99

7 11 0.00048 0.028 15.0 1.4 1 23 382 405 382 405 0.98

8 11 0.0058 0.34 11.6 4.5 2 23 412 433 411 433 0.96

9 11 0.00027 0.015 15.9 2.4 1 23 439 461 439 461 0.99

10 11 1.4e-05 0.00083 19.9 1.6 1 23 467 490 467 490 0.94

11 11 2.6e-06 0.00015 22.2 2.3 1 23 504 526 504 526 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.071	4.1	8.2	4.0	1	23	211	233	211	233	0.99
2	11	1.3e-05	0.00079	19.9	1.4	1	23	239	261	239	261	0.98
3	11	0.00018	0.011	16.4	2.1	1	23	267	290	267	290	0.95
4	11	0.038	2.2	9.1	3.2	1	21	296	316	296	318	0.95
5	11	0.00012	0.007	17.0	2.7	1	23	324	346	324	346	0.99
6	11	8e-06	0.00047	20.7	4.1	1	23	352	374	352	374	0.99
7	11	0.00048	0.028	15.0	1.4	1	23	382	405	382	405	0.98
8	11	0.0058	0.34	11.6	4.5	2	23	412	433	411	433	0.96
9	11	0.00027	0.015	15.9	2.4	1	23	439	461	439	461	0.99
10	11	1.4e-05	0.00083	19.9	1.6	1	23	467	490	467	490	0.94
11	11	2.6e-06	0.00015	22.2	2.3	1	23	504	526	504	526	0.97

Sequence Information

Coding Sequence: ATGTTTGAACGGGATGGGGATGACTCGTTCCGTGATAACTACCGATCACCCTCTATGACTTTCCACAAACGCCACCCTCCTATCCCACATAGTTTCCGAGATCCCGTCGCCAACTTTTTACCAGCAACAATGCCTCCTCCTAAAAGTCAACCGGGGCTTATGGAAATTGAAGCTTATGTAGCAAGTCCACTTCCAGAAGAAAACCAAGAGCAAATCATTATAGAAGCGGCCGAAGAAGAGGAGGACAATGATGAAAATATCACATATTTTGTTGACAATGAGGGTCGTTATTACTATCAAGCATCGAGCAATGCTACTTCAGTTGGTGAAGATGGTGTGACAATAACAGAGGGGTCGCAGCCAATGCTAATGAGTGCAATTGGAAATTTCGAGCCTGTCACATTGCTCCCAGAAGTGGGTTCGGGAGAGGTTAGCTACGTACTTGTGGTACAGGATGACACAAAGCCCATCGTCACCATTAAAGAACCGAAGGTGGAAGGAGACGAATCGACCGAAGACGTGTACCGGTTTGAAATTGAAGATGATACAGTTGAGGAAGAGAGAAGTGAGGAAGATGGGGAACCTCGTCCAAAGAAACAAAAGACACGAGGCATCAGAACCGATAGGACATACAAGTGCAGCTTTTGCGCTTACATCAGTCACCGACGTTATTTACTCCTACGTCACCTGAAGTCTCATTCCGACGAGCGACCACACAAGTGTGGAGTGTGTGAGAGGGGTTTCAAAACACAAGTCTCCTTACAAAACCACCTCAACATGCATAACGGCGTGAAACCTCACGCCTGCAAATACTGCAGCAGCTCGTTCACAACGTCAGGCGAGCTGGTTCGTCATGTACGCTATCGGCACACCCACGAGAAGCCTCACAAATGTTCGGAATGCGACTACGCCTCTGTTGAGCTTTCCAAGCTGCGGCGTCACGTCCGTTGTCACACTGGAGAGAGACCGTACCAGTGCCCGCATTGCACTTACGCGTCGCCGGACACGTTCAAGCTGAAGCGTCACCTGCGCACGCACACCGGGGAGAAGCCGTACAAGTGCGACAACTGCAACATGTGCTTCACGCAGTCCAACTCGCTCAAGGCGCACAAGCGCATACATAACGTGGCGGACAAACCAGTGTACCAATGTGAGCTGTGTCCGGCAAAGTGTGGACGAAAAACGGATTTGCGTACTCACATTCAAAAACTCCATACATCGGACAAACCGTTGAAATGTAAACGGTGTGGAAAGTCTTTCCCGGACCGATATTCTTGCAAGGTTCACAATAAGACTCACGAAGGCGAGAAATGCTACAAATGCGAACTATGTCCATATGCGTCCACCACAATGCGGCATCTTAAATCTCACATGCTCAAACATACAGATGAAAAACCATTTATGTGCAGTGAATGTGATCAATCATTCCGGCAAAAGCAACTGTTGCGTCGTCACGAGAACTTGTACCACAATCCGGACTATGTACCGAAGCCGCCCAAAGAGAAGACACACTCTTGCCAGGATTGCAACCGCACCTTCGCACACAAGGGGAATCTGATCAGGCATCTTGCGGTTCACGATCCGGACTCCGGCCACAAGGAGAGAGCTTTAGCTCTAAAAATTGGACGCCAACGAAAGGTTGTCCAAAATATGCGGAACGCGCAAAGTGTCCAGCCAATTGACATCGATTCCGAGGACGACGAAGACGACGAATCGGAAGTGAATATAAGCGAGAATTTGAGTAACGGTGAGATGGTGACGGTGGACGGCGGCGACGGTGAACAGTACGTCGTATTGGAAGTGATTCAGCTCGAGGAAGGAGTTCAGCAAGTGGCAGTTGTGGCGCCCAAATTCGAGAAGGATAACACAATGGCTGAATCGGAAGAGGAAGAAGATGAAATGGATGAAGAGGAAGAGGAAGAAGACATGGAAGACCCGAAGCCGCAGGTTGACTTGCTAACGCAAGCGCGACAAAAGGCCCTCGAGAGGAGCATCAAACTAGAGAAAGATGTCAATGAATGTTTTGGATTTGATGTGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGAGTCAACATGGCGAGAAAATCATTGTGGATTTGGAGTGA
Protein Sequence: MFERDGDDSFRDNYRSPSMTFHKRHPPIPHSFRDPVANFLPATMPPPKSQPGLMEIEAYVASPLPEENQEQIIIEAAEEEEDNDENITYFVDNEGRYYYQASSNATSVGEDGVTITEGSQPMLMSAIGNFEPVTLLPEVGSGEVSYVLVVQDDTKPIVTIKEPKVEGDESTEDVYRFEIEDDTVEEERSEEDGEPRPKKQKTRGIRTDRTYKCSFCAYISHRRYLLLRHLKSHSDERPHKCGVCERGFKTQVSLQNHLNMHNGVKPHACKYCSSSFTTSGELVRHVRYRHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDNCNMCFTQSNSLKAHKRIHNVADKPVYQCELCPAKCGRKTDLRTHIQKLHTSDKPLKCKRCGKSFPDRYSCKVHNKTHEGEKCYKCELCPYASTTMRHLKSHMLKHTDEKPFMCSECDQSFRQKQLLRRHENLYHNPDYVPKPPKEKTHSCQDCNRTFAHKGNLIRHLAVHDPDSGHKERALALKIGRQRKVVQNMRNAQSVQPIDIDSEDDEDDESEVNISENLSNGEMVTVDGGDGEQYVVLEVIQLEEGVQQVAVVAPKFEKDNTMAESEEEEDEMDEEEEEEDMEDPKPQVDLLTQARQKALERSIKLEKDVNECFGFDVDEEEEEEEEEEEEEESQHGEKIIVDLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387839;
90% Identity: iTF_01386081;
80% Identity: -