Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000538.1:195930-201201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0077 0.45 11.3 0.9 5 23 359 377 358 378 0.93

2 12 0.46 27 5.7 0.3 3 23 385 405 383 405 0.78

3 12 9.7 5.7e+02 1.5 0.5 3 23 414 434 412 434 0.77

4 12 1.7e-06 0.0001 22.7 0.6 2 23 440 461 440 461 0.97

5 12 0.00024 0.014 16.0 2.1 1 23 467 489 467 489 0.98

6 12 0.0086 0.5 11.1 0.0 1 20 493 512 493 514 0.92

7 12 0.00022 0.013 16.1 0.2 1 23 547 570 547 570 0.96

8 12 0.00064 0.037 14.7 0.1 3 23 579 599 578 599 0.99

9 12 7.9e-05 0.0046 17.5 0.2 1 23 610 632 610 632 0.98

10 12 9.4e-05 0.0055 17.3 3.4 1 23 638 660 638 660 0.98

11 12 0.00056 0.033 14.8 0.2 3 23 668 688 666 688 0.98

12 12 2e-05 0.0012 19.4 0.8 1 23 694 717 694 717 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0077	0.45	11.3	0.9	5	23	359	377	358	378	0.93
2	12	0.46	27	5.7	0.3	3	23	385	405	383	405	0.78
3	12	9.7	5.7e+02	1.5	0.5	3	23	414	434	412	434	0.77
4	12	1.7e-06	0.0001	22.7	0.6	2	23	440	461	440	461	0.97
5	12	0.00024	0.014	16.0	2.1	1	23	467	489	467	489	0.98
6	12	0.0086	0.5	11.1	0.0	1	20	493	512	493	514	0.92
7	12	0.00022	0.013	16.1	0.2	1	23	547	570	547	570	0.96
8	12	0.00064	0.037	14.7	0.1	3	23	579	599	578	599	0.99
9	12	7.9e-05	0.0046	17.5	0.2	1	23	610	632	610	632	0.98
10	12	9.4e-05	0.0055	17.3	3.4	1	23	638	660	638	660	0.98
11	12	0.00056	0.033	14.8	0.2	3	23	668	688	666	688	0.98
12	12	2e-05	0.0012	19.4	0.8	1	23	694	717	694	717	0.96

Sequence Information

Coding Sequence: ATGGATGAATGGTCAAATTTGTGCCGATGCTGCCTAACCCCTGATTCGCAGGTGTCGCTTACTAACGCAGAACTGAATGTTAAGGAGAAATTCCTGGAAGTAACCACTATAGAGGTGTCTGAAGAAGATGGATTGCCACAGAAATTATGCAAAGATTGTTTCACTGTGTTAAATTCTGCATATCAATTTAGAAAACAGTGTCTTAAAATGGAACAAGAATTAAAATTGCAATTGGAAGCAGCAATTTTAAGACAGGCCGAGGAAATAAACACAAATGATAAAATGGAAACAATAGAAGAGAACCAAAGAACAGAAGATGATTCTAACAATACTAATATAGACCCTATGAAACAACTAGAATCTATTGTGAAAATGGAAGCGGCTGATAACGATGAAGATTTCTACTTATTCCTTGTTATCAATGATAAAGATAAAGACAAGACATCAGAGGAGCTTACCAATGAAGAAAATTCACCCATAAAACTGGAACAAATTGGTAATGATAATAATGTATCTATATCAAAAACTTCGACCGTTAAAGTTGATGACGATTTTGAAAATTCAATTGGTTCTTTTCTGATGTCAAATAAAGTACCAGCTAACGTTCCAGCAACGATTCTCGAAAACGAGGAAGACAGTCAAGGCAATGACGACTTTCAAATAATAGTTGCGTCACCCCACGATGCTAATCGCGAGGATTCGCAATCTGATTTTCCAGAAAGTACCAATGCTCAATTTGAAAGTATGGATGAAGATGAAAATATTGATGAACAAGTAACTGAGAAAATAGGTGCAGATGGAAAAAGCCGTTTTATCAAAATAATTACATCATCGGGAAAAGATGGCACCTTACTTTTGAAGGGCAATAACAATGTTGCATATTTGGCGAATACAGAGTTAGGGTCAACTGACAATGGCGATGATCTGTCCCAAGATGAGGTTATATTTTATGAAGGTGACGATCCGTCACAGTTGGAAATATTGAAGTGTGAAGGTTCAGAGTTGATCATAGAATATGCTGAGGAAGGTCAAATCGCAACAGTATTGCAGCAAGATGACGGCACGTTTTTGTGCAATTGTGGAGAACAATTTGCGGATTTGTCTGAATACGAGAAACATCAATACACACATCATCAATCCACAGAACATCTTTGCAATTTGTGCGGTAAAGGATTCGAATCTGATGAGATTCTAACGGGACATACACTTTTACACAAAGTCACAGGCTTGTTGATTATGTGCCCGTTCTGCAATCAATTGATGAAACGCAATTCTCTCACTCAGCACATAAAATATGGACACAACAATATAAGACCTCGGTGCAATGTTTGTTTGAAGACATTCGCTAATCCAAACAACTTGAAACGTCACATGCTGATCCACAATGACATTAAGAAATTTGAGTGCGATATTTGCTTTAAAAAGTTCAATCAAAAGATCACAATGCAAACACATCGCATAACTCACATGAATCCTTTTATTTGTGCAGAGTGTGGGATGACTTTTGAGAACAAGGCATCGGTCGCGGCTCACAAAGAGTCGAACGAATGCACCAAGTCCAAAGTCGGTGAGCTCACTCAGGAAATGATGAAGAAAATAAAGCAGGAGATAACTACGAACGTTGGGAAGCTATTGGGATATGCTTGCTCGTTGTGCAACAAAATGTTTACACTGGAAAGTGCTCTAGACAAGCACATAGAGTCGAGTCACGTTTTGAATCTGACCGAATTGCTTTGTTCCGAGTGCGGTGAAGTGTTGCCTTCGAAAAAGGAAATGCAGACTCACATAATGACTCATAAGAATGTGAAAAGTAGAAATATGAAACGCTTCGAGTGTAGCATTTGTGGTAAAGGATGTGCGAGCCAAGCTATGTTGGTGATGCACGAACGAGTTCACACAAACGAGAGGCCTTTCCCTTGTGCACTTTGCTCTCTTCGCTTCAAGACTAAGACACATTTGAGAACCCATCAGTTGACACACACAAGGGAGAAGAAGTTTGGATGTTCGGTTTGTTTGAAATTCTTCGCTTTAAAAGGGAATTTGGTCGTACACTTGCGTACACACACCGGGGAGAGACCGTACGTTTGTTCGTTGTGCGGCGAAGCGTTCATAGATTCCAAATATTTGAAGAAACACAAGTTAAAGAAACACGCCATAGATAATGTACCATGGAATAAATATTGA
Protein Sequence: MDEWSNLCRCCLTPDSQVSLTNAELNVKEKFLEVTTIEVSEEDGLPQKLCKDCFTVLNSAYQFRKQCLKMEQELKLQLEAAILRQAEEINTNDKMETIEENQRTEDDSNNTNIDPMKQLESIVKMEAADNDEDFYLFLVINDKDKDKTSEELTNEENSPIKLEQIGNDNNVSISKTSTVKVDDDFENSIGSFLMSNKVPANVPATILENEEDSQGNDDFQIIVASPHDANREDSQSDFPESTNAQFESMDEDENIDEQVTEKIGADGKSRFIKIITSSGKDGTLLLKGNNNVAYLANTELGSTDNGDDLSQDEVIFYEGDDPSQLEILKCEGSELIIEYAEEGQIATVLQQDDGTFLCNCGEQFADLSEYEKHQYTHHQSTEHLCNLCGKGFESDEILTGHTLLHKVTGLLIMCPFCNQLMKRNSLTQHIKYGHNNIRPRCNVCLKTFANPNNLKRHMLIHNDIKKFECDICFKKFNQKITMQTHRITHMNPFICAECGMTFENKASVAAHKESNECTKSKVGELTQEMMKKIKQEITTNVGKLLGYACSLCNKMFTLESALDKHIESSHVLNLTELLCSECGEVLPSKKEMQTHIMTHKNVKSRNMKRFECSICGKGCASQAMLVMHERVHTNERPFPCALCSLRFKTKTHLRTHQLTHTREKKFGCSVCLKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHAIDNVPWNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386972;
90% Identity: iTF_01388773; iTF_01386972;
80% Identity: -