Smyo014750.2
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000963.1:97442-104952[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00047 0.028 15.1 0.3 1 23 286 308 286 308 0.96 2 14 4.2e-05 0.0024 18.4 1.6 2 23 316 337 315 337 0.96 3 14 0.27 16 6.4 2.4 1 23 341 363 341 363 0.97 4 14 0.036 2.1 9.2 3.1 1 23 368 391 368 391 0.97 5 14 0.0011 0.064 13.9 0.2 1 23 395 418 395 418 0.94 6 14 0.018 1.1 10.1 0.2 2 21 437 456 437 461 0.92 7 14 0.0015 0.088 13.5 0.8 3 23 471 492 471 492 0.98 8 14 0.012 0.69 10.7 0.4 2 21 530 549 530 554 0.92 9 14 0.0015 0.088 13.5 0.8 3 23 563 584 563 584 0.98 10 14 0.44 26 5.7 0.9 2 23 604 626 604 626 0.96 11 14 6.2e-06 0.00036 21.0 0.5 1 23 637 659 637 659 0.99 12 14 2.7e-05 0.0016 19.0 1.3 1 23 665 687 665 687 0.98 13 14 5.1e-05 0.003 18.1 0.4 1 23 693 715 693 715 0.98 14 14 6.3e-05 0.0037 17.8 0.2 1 23 721 744 721 744 0.98
Sequence Information
- Coding Sequence
- ATGAATAATACGGGAGACGTGAAAGTATGCCAGATGTGCCTTGTTATGGACGTGAAATTGTATAATATGCTGACATACTCCTTGGAGACGTATCTTGAGGCCATTATTGGTCACAATCCCTTAAGAGCATTTGAACTGCCACCATACATTTGCTATGAATGCACTTCGCTAGCAAGAAAATACTACTTATTCAAAGAGAGATGCCTTAGGGGTCAGCGAACCTTGTATGACATTCTTCATCAAAACGGAAAGATTACAGTCAATCACATCAAACAAATTGATAGAGATAGTTTTGAATTAACTTCCAATCTTAACGTTAATGTAGTTATTGCAGAGGAGTTTTTTGGTTCAAATTGTGTGGAATTAGAATTGGATATAAAGAAAGAGATAGAGAAAGATGATGACAACGATGAGTATTTTAAACAAGATTACGATTCATTCCAACCAATGTCAGTATCGAGCGATGATGAACCGCTATCACTGCATAAAACTAAAGAGAGGAATGTTAAGAAAAAAGTAGAAAAGAAAAAAGGGAAGACAGAAAAAGGTTTTGAGAAGACAGAAGAATCTCACGAGCAGTTACAAGATGTGGAATTGGATAAAGATGTGTCGCCTCTATCGATTGAATTACTTGACAATGTGAAAGTTAAAGCAAATAGAGGTCGACCCAGGAAAACGGACAGCGTGAAGATAAAGCCAAAAGAAGAGAAATGTCGACGGACCAAGAACACTTTTGGCGTTGGGGTGGAGGAGATTGATCTGGAGGAATATGTGACTATAATTAAGCTATCTATGGAGGAACAAATTGCCGAGATAAACAACCGAAAAAACTCGTCGAACTACCAAAAAGCACCTTTCCAATGTAATCTGTGCTACAAGGGCTTCGTCGACAAGGACGCTTGGCAGAATCACGTTGGAAAACACGACCCGAAAGCGGGCGAAGTCGAGTGTCCAATTTGTAAATTCCGGTTCAAAACGAAACGTACTCTGCAAAAGCATTACATTAACCACGAGAAGAAGTATGCTTGTAAAACCTGCTCTCATATATCAAAAACAGCAACTAAAGCCAAACAACATCAGAGATGGCACAAAGGAGTCACATACAAATGCCAGTACTGCGACGAAGTTTCCACTAAATCAACTTCGCACTTGAGTCACATGAGGATAAAGCATCCGTCGGAGTTCATATGCGGCGTTTGCGGATACTCTTTCGTCAGTAAACTGGGACTCACCATGCACAAAACCATGATGCACAAGGACGTCGTGGAAAACTTGGAGAGTAAGAAGGATGAAAAGGAAGAGGGTCCGTACTGTACGGAGTGCGATGTACAATTTATATCCACTGAGGCGTGGAAGAGACACATGGTGACGTCCGCTAAACACACGCAAACCAAGGACTTCAGCACCGGGTGTCGCGTGTGCGGCGAGACATTCCCCAACGGCGAAGAGCTGAGGATGCACCACCGCAAGGAGCACGCTCGCAAACGCCCCAAGAACTACGGCAAGAAGCCCTCCACCCACACCTGGCCTGCCTCCTGCGAACACGAAAATTTGGAGAGTAAGAAAGATGAAAAGGAAGAGGGCCCTTACTGTACGGAGTGCGATGTACAATTTAAATCCGTTAAGGCGTGGAAGAGACACATGGTGACGTCCGCTAAACACACGCAAACCAAGAACAACGCCGGGTGTCGCGTGTGCGGCGAGACATTCCCCAACGGCGAAGAGCTGAGGATGCACCACCGCAAGGAGCACGCTCGCAAACGCCCCAAGAACTACGGCAAGAAGCCCTCCACCCACACCTGGCCTGCTTCCTGCGAACACTGTTCAGTGGAGATTTCGAACGCCCGAGATTACTGGACTCACTTCCGTCGCGAACACCCTGACAAGAACTATCCCATACAGAAGAACTACGTGTGCGATATATGTGGCAAGAGCTTCAGGGGCAACGCGTTCCTGGTATACCACAAGCGGACCCACTCGACTGAGCGCGCTTACAAGTGCGCTCAGTGCCCCAAGGCCTTCTTCAACCGCACCAACCTGCAGATGCATGAGAAGTCGCACTCTGACAACCGGCCCTACCCCTGCTCCGTCTGCCTTAAGGCCTTTAAGGGCAAGGGCGCGCTCAACAGGCACTTTCGGAGTCACACTGGCGTGAAGCCGTACGTGTGCGAGGTGTGCGGCAAAGCGTTCGGTCAGTCCAACAGTCGGAAGCTGCACGTGCGCACCGTCCACTTGAAGCAGCCCACGCCCTACGTCAGCAGGACTCGCCTCGAGAGGCGCAATAAGGTTCCTCCTCCCAAGGACTCTCAGCCTATGGAGTTGGTACTCGTACCTTAA
- Protein Sequence
- MNNTGDVKVCQMCLVMDVKLYNMLTYSLETYLEAIIGHNPLRAFELPPYICYECTSLARKYYLFKERCLRGQRTLYDILHQNGKITVNHIKQIDRDSFELTSNLNVNVVIAEEFFGSNCVELELDIKKEIEKDDDNDEYFKQDYDSFQPMSVSSDDEPLSLHKTKERNVKKKVEKKKGKTEKGFEKTEESHEQLQDVELDKDVSPLSIELLDNVKVKANRGRPRKTDSVKIKPKEEKCRRTKNTFGVGVEEIDLEEYVTIIKLSMEEQIAEINNRKNSSNYQKAPFQCNLCYKGFVDKDAWQNHVGKHDPKAGEVECPICKFRFKTKRTLQKHYINHEKKYACKTCSHISKTATKAKQHQRWHKGVTYKCQYCDEVSTKSTSHLSHMRIKHPSEFICGVCGYSFVSKLGLTMHKTMMHKDVVENLESKKDEKEEGPYCTECDVQFISTEAWKRHMVTSAKHTQTKDFSTGCRVCGETFPNGEELRMHHRKEHARKRPKNYGKKPSTHTWPASCEHENLESKKDEKEEGPYCTECDVQFKSVKAWKRHMVTSAKHTQTKNNAGCRVCGETFPNGEELRMHHRKEHARKRPKNYGKKPSTHTWPASCEHCSVEISNARDYWTHFRREHPDKNYPIQKNYVCDICGKSFRGNAFLVYHKRTHSTERAYKCAQCPKAFFNRTNLQMHEKSHSDNRPYPCSVCLKAFKGKGALNRHFRSHTGVKPYVCEVCGKAFGQSNSRKLHVRTVHLKQPTPYVSRTRLERRNKVPPPKDSQPMELVLVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386110;
- 90% Identity
- iTF_01386985;
- 80% Identity
- -