Smyo015474.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- -
- Assembly
- GCA_944738625.1
- Location
- CALYFO010001051.1:47507-51791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.87 51 4.8 0.2 5 17 128 140 126 141 0.88 2 14 0.0007 0.041 14.5 0.7 1 23 149 171 149 171 0.97 3 14 0.0002 0.012 16.3 1.4 1 23 177 199 177 199 0.98 4 14 5.3e-05 0.0031 18.1 3.4 1 23 205 228 205 228 0.95 5 14 0.0035 0.2 12.4 0.2 1 23 234 256 234 256 0.97 6 14 2.1e-05 0.0012 19.3 1.0 1 21 262 282 262 287 0.93 7 14 0.0028 0.16 12.7 2.4 2 23 317 339 316 339 0.94 8 14 0.015 0.88 10.3 0.8 5 23 353 372 352 372 0.91 9 14 6.8e-07 3.9e-05 24.0 1.7 1 23 378 401 378 401 0.97 10 14 1.4e-06 8.3e-05 23.0 4.3 2 23 408 429 407 429 0.97 11 14 1.1e-05 0.00063 20.2 2.3 3 23 437 458 435 458 0.92 12 14 6.8e-07 3.9e-05 24.0 1.7 1 23 464 487 464 487 0.97 13 14 1.4e-06 8.3e-05 23.0 4.3 2 23 494 515 493 515 0.97 14 14 3.1e-05 0.0018 18.8 6.0 3 23 523 543 521 543 0.95
Sequence Information
- Coding Sequence
- ATGGTGCGTTGGTCACTGACCTGTAAAAGATCACTGACTTCTCGCTATAGAGTTCAGAATACTATGTTCCTTGAACAGTTTGAACCCTCGGAATGTGACAAAATTAATACAATATGCGACGAGTGTATTGAAAAACTACGAATCTCAACGGATTTGAAGATTGCCTTTGGGAAAATTATTAAACAAGGACCGTTGATTAAAGTCAACGTAAAAGTTGAAAAGGAAGAGCCTCCCACTCACAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGACGAAGTATCCAATCAAGATGGCAAAATTGAAGAGAGCGGAAACGAATTAGATGAAACCTTAAGTGAATCTGAGAACGACAGACACGAGAATAAAAGCAATATTTGCAATAAAACTTTTAGGTTAAAAAAGTACCTACAAAGTTACATCAAGGCGCAAATTAAACATCGTTGTGAAGTATGCAATATAGATTATCAGAGCAAAGGTGAATTGCGTAGGCATGAAATGGTGCATAAGGAAGAGAGAAAGTTTAAGTGCTCAATATGTAATAATAGGTTTACACTGAGCAGAAGTTTGAAGGCTCACGTGGAAAAACACAAGGACGAAACACCGCACGAGTGCCAAGAGTGCGGCCGGAAATTCAAAGTCAAAAAAAGCTTATTGAGGCATCGTCAAAACATGCACATGGGTGTAAAAAAGTACAGTTGCCAGTATTGTGAAAAGGGATTTATGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGATGTAAAACCGTATGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGCTTTGGTAAGTCATAATAAAGTGTATGAGAAACATGAGCCTTACAATTGTAAGCTGCGTGAAAATAGATTTAAAAGAAGAAAAAATTTCAATAGACAAATGTTGTCGCATGCTAAGATAAAAGAGTGCGACATTTGCAAAAAGACATTTAAATGCAAGTCTAATATACGCCTGCACATGTTGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTGCCACTGAGTACGACATTTGCAAAAAGACATTTAAATGCAAAGAGAGTTTAAGGAGGCACATATCGGCTGTACATTCGGACCTTCCACCCTTTCAGTGCGACATTTGCAAGAAGACATTTAAATACAAAGAGAGTTTAAGCAGGCACATATCGTCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAAATACAAACATAATTTAAGCAGGCACATGTCTGTACATTCGGACCTTCCACCCACTCACTGCGACATTTGCAAGAAGACATTTAAATACAAAGAGAGTTTAAGGAGGCACATATCGGCTGTACATTCGGACCTTCCACCCTTTCAGTGCGACATTTGCAAGAAGACATTTAAATACAAAGAGAGTTTAAGCAGGCACATATCGTCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAAATACAAACATAATTTAAGCAGGCACATGTCTGTACATTCGGACCTTCCACCCACTCATTGCGACATTTGCAAGAAAACATTTAAATACAAACATAATTTAAGCAGGCACATGTCTGCACATTCGGACCTTCCACCCACTTAG
- Protein Sequence
- MVRWSLTCKRSLTSRYRVQNTMFLEQFEPSECDKINTICDECIEKLRISTDLKIAFGKIIKQGPLIKVNVKVEKEEPPTHNDEDNHSDINVVLDEVSNQDGKIEESGNELDETLSESENDRHENKSNICNKTFRLKKYLQSYIKAQIKHRCEVCNIDYQSKGELRRHEMVHKEERKFKCSICNNRFTLSRSLKAHVEKHKDETPHECQECGRKFKVKKSLLRHRQNMHMGVKKYSCQYCEKGFMMKGRLVAHEMIHTDVKPYECEKCNKSFRSKDALVSHNKVYEKHEPYNCKLRENRFKRRKNFNRQMLSHAKIKECDICKKTFKCKSNIRLHMLAVHLGFKPTPTATEYDICKKTFKCKESLRRHISAVHSDLPPFQCDICKKTFKYKESLSRHISSVHSDLPPTQCDICKKTFKYKHNLSRHMSVHSDLPPTHCDICKKTFKYKESLRRHISAVHSDLPPFQCDICKKTFKYKESLSRHISSVHSDLPPTQCDICKKTFKYKHNLSRHMSVHSDLPPTHCDICKKTFKYKHNLSRHMSAHSDLPPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -