Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000435.1:382683-391217[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.3e-08 4.3e-06 27.1 1.9 2 23 132 153 131 153 0.98

2 12 0.0025 0.15 12.8 0.1 1 21 156 176 156 177 0.95

3 12 0.00062 0.036 14.7 3.8 1 19 184 202 184 207 0.89

4 12 0.0011 0.065 13.9 2.3 1 23 213 235 213 235 0.98

5 12 6.6e-06 0.00038 20.9 1.0 1 23 241 263 241 263 0.95

6 12 0.00011 0.0063 17.1 7.1 1 23 269 291 269 291 0.99

7 12 3.2e-07 1.9e-05 25.1 0.9 1 23 297 319 297 319 0.98

8 12 0.0092 0.54 11.0 3.0 1 23 325 349 325 349 0.84

9 12 0.22 13 6.7 0.1 8 20 364 376 358 378 0.90

10 12 4.6e-06 0.00027 21.4 1.1 2 23 389 411 388 411 0.94

11 12 1.2e-06 7e-05 23.2 1.4 2 23 420 442 419 442 0.94

12 12 1.2e-06 7e-05 23.2 1.4 2 23 451 473 450 473 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.3e-08	4.3e-06	27.1	1.9	2	23	132	153	131	153	0.98
2	12	0.0025	0.15	12.8	0.1	1	21	156	176	156	177	0.95
3	12	0.00062	0.036	14.7	3.8	1	19	184	202	184	207	0.89
4	12	0.0011	0.065	13.9	2.3	1	23	213	235	213	235	0.98
5	12	6.6e-06	0.00038	20.9	1.0	1	23	241	263	241	263	0.95
6	12	0.00011	0.0063	17.1	7.1	1	23	269	291	269	291	0.99
7	12	3.2e-07	1.9e-05	25.1	0.9	1	23	297	319	297	319	0.98
8	12	0.0092	0.54	11.0	3.0	1	23	325	349	325	349	0.84
9	12	0.22	13	6.7	0.1	8	20	364	376	358	378	0.90
10	12	4.6e-06	0.00027	21.4	1.1	2	23	389	411	388	411	0.94
11	12	1.2e-06	7e-05	23.2	1.4	2	23	420	442	419	442	0.94
12	12	1.2e-06	7e-05	23.2	1.4	2	23	451	473	450	473	0.94

Sequence Information

Coding Sequence: ATGGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGTTGCGCTCCACTTGACGGGGGCACTGCAGTGACCCCAGATGTGAAACAAAATGCCTTCGAAGATGAAGACACAGATATGATAAATAAGGTTTTAGAAGAAGAGTCAAATGAAGAGGTGAAAGTGGAAGAGAGTGGAAACAAATCAGACGAAACCTTTAGAGAATGTGAAGAATTTACAGACGACATCGAAGTTAAAACAGAAGAATGTGTTGACGATGAAGATTCTCATATAGATAATGTGTTAGACGAAGACTTCACAATTGAAGAGAGCAGAAAAGAATCGTTGAGTGAATCGGGTGTCAATTTAAGAAACACAAGCGTTAAAAATGAGAATAAATGCAATATTTGCAATAAAACTTTTAAACGCAAAGGGAACCTAGAAAATCATCTCAAAATTCACGAGGGCTATAAATGCCAAATATGTCCAGAAATATTGTCGAATCAGAGAGAGTACGATAAACACATGGAAATACAACCGGGCGGAATAACACACGAGTGCAAAGAGTGCGGTCGGACATTCGCAACCAAGAGAACCTTGCTGAGCCATTGTCAAAACGTGCACATGAGTATAAAAAAGTATAGTTGCCAGTATTGCGATACAAGAATGACGACAAAAACGCATTTGGTTATACACGAAAGGATACACACGGGTGTGAAGCCGTATGTGTGCGAAAAATGCAATAAAGCATTTAGTACTAAAGGGGCCTTACACAAACATAATGCAGTTCATTTGGCACTTAAGCCTTACGTTTGTAAAGTGTGTGATTATAGATTCAAAAGAAAAGAGCATTGCCAAAGACACATGTTGACGCATACAGGGATAAAATGTTTCCAATGCGGTGTCTGTAGCAAGACTTTTGGGCAGAAATATCAACTCAATAGACACATGGAGGTCCATAATAAAGAAAGACCCTACGAGTGCAACATTTGTAAAAAGTTTTTTTTTAAATCCGAGGAGTACTTACGCAAGCACATGTCGGCTGTACATTTGGACTTTAAGCCAACGCCCACTCAGTGTGAAATTAGCAAGAAGATATTTAAATACAAGTCGAATATGCGCCAGCACATGTCGGCTGTAAATTTGGGCTTTAAGCCAACGCCCACTCAGTGTGAAATTTGCAAGAAGACATTTAAATACAAGTCGAATATGCTCCAGCACATGTCGGCTGTACATTTGGGCTTTAAGCCAACGCCCACTCAGTGTGAAATTTGCAAGAAGACATTTAATTACAAGTCGAATATGCGCAAGCACATGTTGGCTGTACATTTGGGCCGTAAGCCAACGCCCACACAGTGTGAAATTTGCAAGAAGACATTTAATTACAAGTCGAATATGCGCAAGCACATGTTGGCTGTACATTTGGGCTCCCCCAAAAATAGAGCATGA
Protein Sequence: MEFKNCVLACKKNACWRGHCCAPLDGGTAVTPDVKQNAFEDEDTDMINKVLEEESNEEVKVEESGNKSDETFRECEEFTDDIEVKTEECVDDEDSHIDNVLDEDFTIEESRKESLSESGVNLRNTSVKNENKCNICNKTFKRKGNLENHLKIHEGYKCQICPEILSNQREYDKHMEIQPGGITHECKECGRTFATKRTLLSHCQNVHMSIKKYSCQYCDTRMTTKTHLVIHERIHTGVKPYVCEKCNKAFSTKGALHKHNAVHLALKPYVCKVCDYRFKRKEHCQRHMLTHTGIKCFQCGVCSKTFGQKYQLNRHMEVHNKERPYECNICKKFFFKSEEYLRKHMSAVHLDFKPTPTQCEISKKIFKYKSNMRQHMSAVNLGFKPTPTQCEICKKTFKYKSNMLQHMSAVHLGFKPTPTQCEICKKTFNYKSNMRKHMLAVHLGRKPTPTQCEICKKTFNYKSNMRKHMLAVHLGSPKNRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -