Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0097 12 6.2 1.3 18 44 47 70 40 70 0.86

2 7 0.00021 0.25 11.6 0.1 5 26 68 89 65 95 0.93

3 7 0.011 13 6.1 1.1 13 36 103 131 89 132 0.85

4 7 0.0038 4.7 7.5 0.2 19 44 136 158 133 158 0.92

5 7 0.03 36 4.7 0.1 19 44 165 187 160 187 0.85

6 7 0.0028 3.4 8.0 0.3 9 40 185 216 180 218 0.80

7 7 0.069 83 3.5 0.2 18 38 229 246 224 252 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0097	12	6.2	1.3	18	44	47	70	40	70	0.86
2	7	0.00021	0.25	11.6	0.1	5	26	68	89	65	95	0.93
3	7	0.011	13	6.1	1.1	13	36	103	131	89	132	0.85
4	7	0.0038	4.7	7.5	0.2	19	44	136	158	133	158	0.92
5	7	0.03	36	4.7	0.1	19	44	165	187	160	187	0.85
6	7	0.0028	3.4	8.0	0.3	9	40	185	216	180	218	0.80
7	7	0.069	83	3.5	0.2	18	38	229	246	224	252	0.73

Coding Sequence: ATGAGTAACTATGAGTTTAAAGCGACTGTGGAGGTGAGCGTGGAAAGACTTGACGTGGAAACGGTAGACGATGAATTGACCTCCACCGCTGTGGTGCTGCACGAGATAATGAGCACTAGTGCTAGCGGACAGGGCGAGATTTGTCCACATTGCGGAAAGCTGTACAAGACGGCGAGCACCCTACAATCGCACTGTCAACTTAAGCACCCGACGCCTGTGACGAGAGCCAGTACGGAAGTTCAGTGTCCGGTCTGCGGCAAAACTTATCCGTCGCTTCTAAGCTTGCACAAGCACTCACGTTACATGCACCGCTACGAATACAAGTGCAAGGCGTGCTATAGGAACTTCGCGACGAGTCTGGAGCTCGAAGATCACACAACCAGTTGCGTCATGACCGAAACGCCGTGCGGAATTTGCGGGAGGGTGTACGGTTCGCGGATGGCGCTTAAGAACCACATGAAATACATGCACCCGGGGGAAAGCAGCCACTGGTGTGTGATTTGCCGTAGAGCGTTCACCAACGGACGAGGTCTCGCCAATCACATGACAGGCATACACCCGGAAAACGCGACCACGTGTGCTTGGTGTGGTCGAGTCTTCTCTTCCAGGCCGGCTCTGGAGAGCCACGTAGTCGGCAAGCATATAAAGAGCAGCGCGGGCGGCGCTAGTGCGGCAGTCAAGCACATCTGCGGTCTATGCAATAGGAAATTTCTACGGACCGCCGAACTAGTTCAACATGCTCTTCGAGAGCACGCTTCTAAATAA
Protein Sequence: MSNYEFKATVEVSVERLDVETVDDELTSTAVVLHEIMSTSASGQGEICPHCGKLYKTASTLQSHCQLKHPTPVTRASTEVQCPVCGKTYPSLLSLHKHSRYMHRYEYKCKACYRNFATSLELEDHTTSCVMTETPCGICGRVYGSRMALKNHMKYMHPGESSHWCVICRRAFTNGRGLANHMTGIHPENATTCAWCGRVFSSRPALESHVVGKHIKSSAGGASAAVKHICGLCNRKFLRTAELVQHALREHASK

Sequence clustering based on sequence similarity using MMseqs2