Smyo001792.1
Basic Information
- Insect
- Synanthedon myopaeformis
- Gene Symbol
- lolal
- Assembly
- GCA_944738625.1
- Location
- CALYFO010000075.1:34852-38159[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-17 6.9e-14 51.5 0.0 1 42 346 388 346 391 0.94
Sequence Information
- Coding Sequence
- ATGTCTACGAATCagcagtacagcctccggtggaacaaccaccagccgaacttcatctcgatgttcacgagtctgctgagtacaaagacgctggtggatgtcactttggctgctgaggggaaacaaatgtgtgcacacaaggtggtcctctcagcttgcagcacatactttcagtcattgttcgtcgagaacccgtcgacgcatcccatagtgatattgaaagatgtgtcgtttgccgatctgcggataatggtcgacttcatgtattacggcgaggtgaatgtgactgaagcgcaactgccgaaggtgctggagacggcgcgcatgctgaagatcaaagggctgactgagatgcCGGAGAACACGTCGCTGACGCGTTTCCAAGGGTCGGCGGGGGACCGCGCCCTCGGCCCCGAGTACCACACGCCCGACAGCGAGTCGCACCTCGTCTCCTCCTCGCCGCCCTCCTCCCCGCACTCGCCCGGCCCTTGCCCCTTGCCCGGCGTCACCGCCCACAAGCGGAAGAGACGTAGGAAGCTATCGATGGAGTCGTCCGGCTTGAACCGCGCCCACGACATTACGCACGATGTGAAGAACGACGAAGCCGGACCCTCGTTGGACATGGTTCAGAGCGAGACAGTCACACTGAGCAGTCTAACGCAGCAGAAGCACACGCGGGACGCGGAGGACAGGCACTTGTGTGTCAACACGCCGCAGACGCAGCCGGGACACAATCTCAACATGGAGACTATGCATCTCGACCAGCACGCTGGAATGTCGCAAGGAGGTCAGTGGAGTATGATGGAGCACACATACCCGCGATACACGAACGCGTGCGTGACCGGTGGCGTGCAGGGTGAGACCGGCATGTACGTGAACAACGTGCTCAACCAGCACGTGGAGGAGCTCAACTACGGCCAGGGCCAGGGCCAGGGCCAGGGCCTGGGCGTGGGCCCGAGCTGCGTGACAGAGCAGCCCTCGCAGCCCAGCGAGACGCCCGTGCAGACGAAGCGGCGGCGCACCACCAATCCCCAGTCGGAGGAGAACTTTCAGAGGGCGCTCGAGGCGGTCCGCTTCGGGGGCATAGGGTTCTGCAAGGCGGCGAGGATATTCGGCGTCAACAATCGGACGCTGTGGCTCGAGTACAAGAAGAAGGGCTACCCGAACAACCGGCCGAGCATCAAGAGCCGCATCAAGAGGGAGCACACGACGCCGCCGCCCGACCACAAGGAGGAGGTGCAGCCGCCCGAACAGCAGATGGCGGTCATTTGCTCGCCGCCCGTGCAAGTGGGCTTCATCGACAGCCGCCCGCTCGACTTCCCGCTGCAGGGCGTCGCCCACAACTCCTCCATTAACATTCTAGGGATGAACTTCAACTCGATCCAATAG
- Protein Sequence
- MSTNQQYSLRWNNHQPNFISMFTSLLSTKTLVDVTLAAEGKQMCAHKVVLSACSTYFQSLFVENPSTHPIVILKDVSFADLRIMVDFMYYGEVNVTEAQLPKVLETARMLKIKGLTEMPENTSLTRFQGSAGDRALGPEYHTPDSESHLVSSSPPSSPHSPGPCPLPGVTAHKRKRRRKLSMESSGLNRAHDITHDVKNDEAGPSLDMVQSETVTLSSLTQQKHTRDAEDRHLCVNTPQTQPGHNLNMETMHLDQHAGMSQGGQWSMMEHTYPRYTNACVTGGVQGETGMYVNNVLNQHVEELNYGQGQGQGQGLGVGPSCVTEQPSQPSETPVQTKRRRTTNPQSEENFQRALEAVRFGGIGFCKAARIFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPDHKEEVQPPEQQMAVICSPPVQVGFIDSRPLDFPLQGVAHNSSINILGMNFNSIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386842;
- 90% Identity
- iTF_01386844;
- 80% Identity
- iTF_01387723;