Sfor017155.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000158.1:888962-905872[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7 3.8e+02 2.1 8.3 1 19 245 263 245 266 0.94 2 13 0.54 31 5.5 2.1 2 23 282 303 281 303 0.83 3 13 8.1 4.6e+02 1.8 2.1 2 16 341 354 340 360 0.78 4 13 5.6 3.2e+02 2.3 0.4 2 23 367 388 366 388 0.94 5 13 0.48 27 5.7 4.7 1 23 840 862 840 862 0.93 6 13 0.012 0.67 10.8 0.4 2 23 868 890 868 890 0.97 7 13 0.45 26 5.8 0.4 2 23 999 1020 998 1020 0.95 8 13 0.00063 0.036 14.8 2.0 2 23 1036 1057 1035 1057 0.96 9 13 2.8e-07 1.6e-05 25.3 2.9 1 23 1063 1085 1063 1085 0.99 10 13 0.0008 0.045 14.4 1.5 1 23 1090 1112 1090 1112 0.98 11 13 0.00067 0.038 14.7 1.6 2 23 1117 1139 1116 1139 0.96 12 13 0.18 10 7.0 0.1 1 20 1146 1165 1146 1169 0.92 13 13 0.00059 0.033 14.9 4.9 1 23 1176 1199 1176 1199 0.95
Sequence Information
- Coding Sequence
- ATGGACGAAACTCGGCCGAAAAATCGTAGAAAAAGCAAATTAATGTACCGAACTGATATTGAGATGGACGACGACTGTATAGAAATTCTACGTCTGCAGAATTCTGTACAAGAGGTGAGCAGTATGATGAAGAACATGACCTCCAAAAATTTCAAACAGGCCACCAGGAACTTTGAAGTCGCCGTAACCGTTGAAAAAGTGAAAGAAGAGAAAATTGAAGAAACTCAAATCGATATACCGAACGACAAGGACGAGTATAAATTTAAAGCGAAACAAAAAATAATTGATAAAAAGAAAATGTGGCAAGTTATGGAATCGATTTCCATCCTCGGAAATGGATTCACCAACTATGCAGATCGGCAGCTAGCTATCGAAGTTGGCAACACTTGGGGCAGACTGGAGACGGAAAATCATCAGGAATCCAAAAAAGAGTTGGCAATTCAGAAAGCGTTATTCGAGTGGCAAAATTGGTATAGCACTAATAAATCTAAATTCTCCTTTGTCGAGACTCCAACGTCCTACAAATGTTATGTTTGTTCGAAGGGATGGTGGCGTTTGAACCCTTTTAGGGAACACATTGAGACCCACGGAGGAGATTTGAAGGTTTCAGTGGAAACTGTGAGTTTACAATGCAATATGATTGCATACATCGGCGTAAAGCCTGAACCAAAAGTGGTTCCGATACCTGGATATTGCATGAAGTGTTTCAAATATTTAGAGGATCACGAAAAGCACAGATGTGATACGTGCCTAAAAGATTTTACTCATTGTTCAGCTTTTTACAGACACAATTGCCTAGTGCCAAGACTTAGTCGTGTGGGCATTTTGGTACCAGACATTCTCACGTGCACAATTTGCGGATATAAATGCAAATCTTCCTCTATAAATAATCATAGATTATTACAACACACGGTGCCATCGGATGAACCTGTGGATTTTTTGCCCAAAAAGCACAAGGATTGTGGCATGAAATATGTATGTTTAGAGGCACACGCTTGCCCCACCGAGATGAGGCAGATTTATTGCAATTTCTGTCCGAGAAAATTTCACAACAGCTTATTCTGTAGATTGCATATGGATATAGCGAATTCGGATGTTACATGTCAGATATGCTCTGAGTTGTTGCCAAAGCAGTGCATGCTAATGGAGCATCTTTCGGCTCACAGCGTACACTTTGCTATGGTGCCCAAATGCTCCCTTTGCACAGTTCCCGTCGTCTTTCCCGACGACGTCTCGGTCAAATATCACATGAAGGAGTGTCACGACAAAATAGAGACCAGGAACAGGACTTTCCACGATATGGTCATAATACCGAAAGTTATATTACAAAAATGTCCTAGTAATGATTTAATGGATATATCTGCAATTAATAAACAAAAAAACGCCATAACTGACAAAGTCAAAAATAACGCAGACAGTAACAACATAATTAATAATGCAAAATCAAATGAAATGGAAATTGAAAAGAAGGCTAACGAACATAATTTATCCATTGATGATTTTATTGAAAATACAAAAATTTCAATGAATAACAAAAATGTAGAAAGTTCCAAAAGTGCACAAAATGAAACGGACGACGAACAAAATGAACTCGTAATAGACGAGACATACGACGATGACCTCATACTGATTGAGGATAGTTCTCGGAAACATGTGATAGAAATATTAGATATATCCGACTCTGAAGAAGAAACAAACAATAAAAAAGAAAGCAAAGATGACGTTGAATCTATACAAAAAAATAAAGAAGATTATGTTATCGATAGTATAAAAATTAATAAAAACCTTGTCTACCCTAAAGTATACGTGAAAATGCCTCAAAAGAGCTCAAAAGAAGTCGCGAATGAAAATTTGAAAGTGACTGATGAAAATTCGCAAACTATAAAAGAAATATATGTTAAAGAAGTTGCGAATGAAAATTTAAAAGTGACTAATGAAAATTCGCAAACTATAAAAGATATATATGTTGACGATGAACATATAGGGAAGATAGTTGAAAAGGAAAACGGCGTTAAATTCGATTTGAGTATAATAAAACAAGAAATTGGCGACGAATTTGAGCTTGAAATAGACGAGGAGCTTTACGTGGACGACTTGCTAATCAAAAGGGAGTCGGACGATTGTAACGAAGTATTGACTCGCATATTCGAGGCGTCCAAGTCTAAAAAGTCTAACGATCATTTCGAAGCAGACGATGAAACGAATATAGGTGTCATCATTAAAACTGAGACAGACGTAGTGAAAGAGCAAAAAAATGATACTCAATTTGATGCAAATTTGAATGGTATAAGAAAGAGCAATTCAAGAAAATTCCAAAGCTCGAAGGAGAAGATAAAATGGAGAAGCTTACGAAGGAAGATTTACAAATGTATGAAATGTTCGTTCCAAGGTTTTCACAAGGCGTATGCGCAGCATAGACAACAGTTTCATCCCACTACGCGGACACATAAAAGACGTAGTCGTAGCGTTAGTACAGATGTTGAAATGAAGATGCATGAATCTGGTTCGGAAAACACGTACAATTGCACCAAGTGCCGGAGAAAATTTAAATCGTACAAAACGTACGTCTACCATTTTATCTTACACGATATAAAATCGAACACTTGTCCGGTGTGCGAAACGATTTTCGATTCACTTATGCCGCTTTGCAATCACATTCAAACTTATCACATTGCGAAAACCTTCGTGTCCTTGAGGGTTATAAATAAGGTCAAAAGTACGCAGGATGAAAATGACGAACCAAAGTACAAAAATAGACCTTTCCATTGTACACTGTGTGGACACAAAGTGTTTAGACAGAATTTTTTCATTCACTGGGAGTACCATTTCTCCCAAACACTCGGATACAGTCGGGTCTCAAATAAACCGGACATACCCATCGAAGAGAGAAAAGTCAAGAGCGGATTAAGTGCAGAAGTTTTAAAAAATTTAAAGGACGCGTTAATAAGCAGCCAAGGGTGCGAATGGTACGAGAAGAGTTTGGTCGAGAGGAAGACTTGTTTGATTTGCTCCAAGTTCTCCAGTCGTATTGGCGAAGCTAAACGTCACCTGATCGAGCATCTTCTGGACGACGCGTACGCCACCTATCCGCTGCACGAGGCGTTAATATGTCAGTTTTGCGGTGAAAAGTTCGACCACCAAATGTTGTACAAACAGCACATGCGCGAACACGGCAATCTGCCGATTTACAAGTGCGAACTGTGCGACAAGACTTTCAGCGATTCAAGCAACTTCACTAAGCACAAGAAGGTGCACAATTTGCTAACATACGTTTGCGATCTGTGCAAGAAGAAGTTCCAAATGAAGTTGTCTCTGGAGAAGCACCTGCGGGACCACGACAAGCCGGTCACGTGTAAACTGTGCCGTAAAGTTTTCCCCCTTAACTCGCAGTACAGAAAACACCTGAAAAATTATCACCAGAAGCTTCCACTGAGATACCCTTGTCGCATATGCAAAGAGAAGTTCCCCTCGTTGAAAGCGAACTGGGACCACATGTGGTCCGTCCACAAGAAGAGAAAGACTAAGCACGATTGCAAGATTTGCGGTTTGGAATTTAGAAAACTGCACGATTTGAAAAAGCACCAAAAATACAACCACGATGTCATTTGA
- Protein Sequence
- MDETRPKNRRKSKLMYRTDIEMDDDCIEILRLQNSVQEVSSMMKNMTSKNFKQATRNFEVAVTVEKVKEEKIEETQIDIPNDKDEYKFKAKQKIIDKKKMWQVMESISILGNGFTNYADRQLAIEVGNTWGRLETENHQESKKELAIQKALFEWQNWYSTNKSKFSFVETPTSYKCYVCSKGWWRLNPFREHIETHGGDLKVSVETVSLQCNMIAYIGVKPEPKVVPIPGYCMKCFKYLEDHEKHRCDTCLKDFTHCSAFYRHNCLVPRLSRVGILVPDILTCTICGYKCKSSSINNHRLLQHTVPSDEPVDFLPKKHKDCGMKYVCLEAHACPTEMRQIYCNFCPRKFHNSLFCRLHMDIANSDVTCQICSELLPKQCMLMEHLSAHSVHFAMVPKCSLCTVPVVFPDDVSVKYHMKECHDKIETRNRTFHDMVIIPKVILQKCPSNDLMDISAINKQKNAITDKVKNNADSNNIINNAKSNEMEIEKKANEHNLSIDDFIENTKISMNNKNVESSKSAQNETDDEQNELVIDETYDDDLILIEDSSRKHVIEILDISDSEEETNNKKESKDDVESIQKNKEDYVIDSIKINKNLVYPKVYVKMPQKSSKEVANENLKVTDENSQTIKEIYVKEVANENLKVTNENSQTIKDIYVDDEHIGKIVEKENGVKFDLSIIKQEIGDEFELEIDEELYVDDLLIKRESDDCNEVLTRIFEASKSKKSNDHFEADDETNIGVIIKTETDVVKEQKNDTQFDANLNGIRKSNSRKFQSSKEKIKWRSLRRKIYKCMKCSFQGFHKAYAQHRQQFHPTTRTHKRRSRSVSTDVEMKMHESGSENTYNCTKCRRKFKSYKTYVYHFILHDIKSNTCPVCETIFDSLMPLCNHIQTYHIAKTFVSLRVINKVKSTQDENDEPKYKNRPFHCTLCGHKVFRQNFFIHWEYHFSQTLGYSRVSNKPDIPIEERKVKSGLSAEVLKNLKDALISSQGCEWYEKSLVERKTCLICSKFSSRIGEAKRHLIEHLLDDAYATYPLHEALICQFCGEKFDHQMLYKQHMREHGNLPIYKCELCDKTFSDSSNFTKHKKVHNLLTYVCDLCKKKFQMKLSLEKHLRDHDKPVTCKLCRKVFPLNSQYRKHLKNYHQKLPLRYPCRICKEKFPSLKANWDHMWSVHKKRKTKHDCKICGLEFRKLHDLKKHQKYNHDVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -