Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000189.1:620966-626039[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5 88 4.1 2.7 3 23 23 44 22 44 0.95

2 15 0.18 10 7.0 0.8 1 19 54 72 54 74 0.98

3 15 0.001 0.059 14.1 2.5 1 23 80 103 80 103 0.96

4 15 0.0029 0.16 12.7 5.0 1 23 105 127 105 127 0.96

5 15 0.83 47 4.9 0.1 1 23 163 184 163 184 0.83

6 15 0.027 1.5 9.7 1.0 3 23 219 240 218 240 0.90

7 15 2.1 1.2e+02 3.7 1.8 1 19 247 265 247 270 0.90

8 15 0.027 1.6 9.6 0.2 1 23 276 298 276 298 0.95

9 15 0.08 4.6 8.1 0.5 1 23 305 328 305 328 0.90

10 15 5.5e-05 0.0031 18.1 0.6 3 23 337 359 335 359 0.94

11 15 1.4 79 4.2 0.7 3 23 367 387 367 387 0.94

12 15 0.016 0.89 10.4 0.6 1 23 392 414 392 414 0.98

13 15 3.9e-05 0.0022 18.6 0.7 1 23 420 442 420 442 0.97

14 15 0.00037 0.021 15.5 3.3 1 23 448 470 448 470 0.97

15 15 0.0035 0.2 12.4 2.3 1 23 476 499 476 499 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5	88	4.1	2.7	3	23	23	44	22	44	0.95
2	15	0.18	10	7.0	0.8	1	19	54	72	54	74	0.98
3	15	0.001	0.059	14.1	2.5	1	23	80	103	80	103	0.96
4	15	0.0029	0.16	12.7	5.0	1	23	105	127	105	127	0.96
5	15	0.83	47	4.9	0.1	1	23	163	184	163	184	0.83
6	15	0.027	1.5	9.7	1.0	3	23	219	240	218	240	0.90
7	15	2.1	1.2e+02	3.7	1.8	1	19	247	265	247	270	0.90
8	15	0.027	1.6	9.6	0.2	1	23	276	298	276	298	0.95
9	15	0.08	4.6	8.1	0.5	1	23	305	328	305	328	0.90
10	15	5.5e-05	0.0031	18.1	0.6	3	23	337	359	335	359	0.94
11	15	1.4	79	4.2	0.7	3	23	367	387	367	387	0.94
12	15	0.016	0.89	10.4	0.6	1	23	392	414	392	414	0.98
13	15	3.9e-05	0.0022	18.6	0.7	1	23	420	442	420	442	0.97
14	15	0.00037	0.021	15.5	3.3	1	23	448	470	448	470	0.97
15	15	0.0035	0.2	12.4	2.3	1	23	476	499	476	499	0.97

Sequence Information

Coding Sequence: ATGGATTCCAAAACAACGCTTCAAATTCCAAAATTGACCACCATTGAAAAGGTTGGCGGCATTCTGTGTCACCTCTGTAATATTGTACACAGTGATAAGAAACAATTTGAAAGCCACTACAAAGCAGTTCATAACAAAAATAACGATGATCGGACCGTATACACTTGTGTTGCCTGTCAAAAGCAATTTCCGGAATATGCCAATTTACGTGCTCACTGTTATGACAATCATTTTGTTTTTAGATGTGATCCATGCGATAAGACCTTCAAAAAATCAGTAGCGCTAAAAGACCATGTGAATAAATGTCACACACACAAATGTTCTACATGTGACAAACGATTCTCAACACAAATAGAATACCATCTTCATAAAATTATCCACAAGGAACAACACAAGAAATCCTCAAAAGAATGTACAATTTGCAAAGAGACAATATTGACTATTGAAACCTGTAATCGGCATATAAAAAAACATTTCAAATTCACATACACTTGTCCCATATGCAACGAAGAGATCGAGAAGGATAACGCATCCCAACATTTGAGTATTCATTTTGGCAACGAAGCCACCGCACACTTGGACTATCCTGGCAACACAGATGATGGTGATAAACTCTCGGAGGGTTCCACCATAGAGGCCGTAGGCGGAGCGTTGTGTGACATATGCAATAGAACGTTCAACGACAAGGACGAATTCGATTTCCACTATTTGACATTCCACGAGCGAACAGAGATTTTCTACTCTTGCAATATTTGCGCAAAACAATACGACAATTTCAGACTCCTCATGGGCCACTGCTACAATGACCATGTCGCTATAAGGGAATTTACGTGCGACGCGTGCGAGGAGACGTTTCCGCGGCTGTCGCGTCTGCTGCTGCACAAGGAAGAGCACTCCGGGGGCGAGAAGAGGCACGCGTGTCTGCTGTGCGACTTGAGCTTCTCGTCCGAGCTGCGCTTGCGCACGCACCGCGTCATAGCTCACTGGGAGCCCGCCAACGCCATATATTGCTCCATCAGCGGCTGCGGACACGTCTACAAATCAAAGAAAGACCTGATAGCGCATCAACGCATGCACAGCTTCAATCCAGACAATTGGTGTCGCCAATGTGGCGTACAATTCACGAGCGCGTTTGACTGTGAAATTCACTTGGACGTGCACAAAACTAATACCTATCAGTGTCCCATGTGTGCCAAGGTTTACAGGGAAGAATATCGCACAACGAACCACGCCAGGTCACATTTTATCACGTCTCAGCACATTTGCAAAATCTGCGGAAAATCTTACACAGCATCCGGTAGACTTGTGCAACACATGAAGGTGCATTCGGTCACTAAAGACTTTCAATGCAACTTTTGCGATAAATCATTCGCAAAAAAGACACACATGGACCAGCATTTGGTAATGCATTTAGGTATAAAACCGTACAAGTGCACAGTTTGCTCGAAAACATTGTCGTCTTTCGCGAATTGGTCGAAACATTTCAAGAGAATGCACAACGAAAACACCGGAAAACCTGAAAAACTGTGGGAAAGTGTCGATTTGACCAACATTTACCAAGTGAACAATAACGATTTAATAATAGAGCCCAAAAGCAGTAGTGCGATGGATTGTGTGACCAAAGATCAGCAAATGAAATATGCAGAACCCGTACATCCCTTAGACGCTAAAGTATGCCCGACTAATCCAAGCGAGCAGATCTCTGTCGAGTTTCTCCCTGAGGAGCCGATCAAAGAGAGGCCCGCACTTGACCCGAATGAAAAATCAGAGCGATCAATTTCATACCCGGATAAAGTTATGCCAGTGCAACTTAATAGGGAACAGCTTGAAATGCAACTCGACGAGGACAAAGTTGAATTCACCAATGTTCTGCTCGAATTGAACACACTCGGCACTGACCCATCAACCGAGTACTCCGTTGCCACGGAGACATCCTTCAACCAGATTTACCCACGTGAGTACGGACCGGACTTTGTTGACACATGTTTCAATTACAGCGGTCATTCGATAGGTGTCGATGATCATGTCATGCTACCTCACATCGATCCCCTGCTCACTGTCGTCAATCAGAAAATGATGTCACAGTTTGATCATCAGCAAGGTCCATCAGCAATTGATCACATATCGGGCAATGCGATTCATCATATGAACCGTGGAATCAAAGATTGCCTCTTCGCTTATCCGATCAACAGATTGATCACTAATACAAATTAA
Protein Sequence: MDSKTTLQIPKLTTIEKVGGILCHLCNIVHSDKKQFESHYKAVHNKNNDDRTVYTCVACQKQFPEYANLRAHCYDNHFVFRCDPCDKTFKKSVALKDHVNKCHTHKCSTCDKRFSTQIEYHLHKIIHKEQHKKSSKECTICKETILTIETCNRHIKKHFKFTYTCPICNEEIEKDNASQHLSIHFGNEATAHLDYPGNTDDGDKLSEGSTIEAVGGALCDICNRTFNDKDEFDFHYLTFHERTEIFYSCNICAKQYDNFRLLMGHCYNDHVAIREFTCDACEETFPRLSRLLLHKEEHSGGEKRHACLLCDLSFSSELRLRTHRVIAHWEPANAIYCSISGCGHVYKSKKDLIAHQRMHSFNPDNWCRQCGVQFTSAFDCEIHLDVHKTNTYQCPMCAKVYREEYRTTNHARSHFITSQHICKICGKSYTASGRLVQHMKVHSVTKDFQCNFCDKSFAKKTHMDQHLVMHLGIKPYKCTVCSKTLSSFANWSKHFKRMHNENTGKPEKLWESVDLTNIYQVNNNDLIIEPKSSSAMDCVTKDQQMKYAEPVHPLDAKVCPTNPSEQISVEFLPEEPIKERPALDPNEKSERSISYPDKVMPVQLNREQLEMQLDEDKVEFTNVLLELNTLGTDPSTEYSVATETSFNQIYPREYGPDFVDTCFNYSGHSIGVDDHVMLPHIDPLLTVVNQKMMSQFDHQQGPSAIDHISGNAIHHMNRGIKDCLFAYPINRLITNTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387961;
90% Identity: -
80% Identity: -