Sfor012048.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000089.1:1408431-1419741[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.9 2.8e+02 2.5 1.3 1 23 241 264 241 264 0.91 2 11 0.00016 0.0093 16.6 0.3 1 23 271 293 271 293 0.99 3 11 0.081 4.6 8.1 3.9 1 23 297 320 297 320 0.96 4 11 0.065 3.7 8.4 1.6 1 23 327 349 327 349 0.95 5 11 4.4e-06 0.00025 21.6 2.1 2 23 354 376 353 376 0.92 6 11 0.15 8.5 7.3 3.0 1 23 382 404 382 404 0.90 7 11 2.1 1.2e+02 3.7 1.8 6 21 419 434 415 439 0.91 8 11 5e-05 0.0028 18.2 1.7 1 23 447 470 447 470 0.94 9 11 0.00076 0.043 14.5 0.7 1 23 475 498 475 498 0.97 10 11 5.4e-07 3.1e-05 24.4 2.4 3 23 507 527 506 527 0.98 11 11 2.3e-06 0.00013 22.4 1.3 1 23 533 556 533 556 0.95
Sequence Information
- Coding Sequence
- ATGGAAAATAAAGTTAACGCCGTTAATCAACTTTGTATGTCTTGTTTGTGCGTCGGCCGCACTCTGTTCCAATTAAATGACGAATCATTGAAGCAATATTACATGGATCTAATTAACGAGATTCCTCTGTGTGCGATATCAGATGCAATCAACGACACGAACATATGCTTTGAATGTGTTGCTATTCTGAAAAAGGTCATTGCATTCAGGGAGCAAGTTAAGGACTCTTATAGAATATTGTTAACATATGTCACTAGTGAGAATCTACGAGAATGTCTACTGGCGGATGTGAGTCGTCCGCCACGGTTGAAAGTTCAAAGCAACGAGGCGGTTGTGAATATACCTGGTGATGAGTTGGCGGTTGTTGCTGAAGAAACACATTCAACACAACTGGTTTATGTCAAGAGTGAGGTTAAACGTGAATGGGAAGTGGAGTTAGAAGGCAACAGTGACAATTCCGACTTCAAAGACAACGATGAAAACCATTTGGAGGAAATCGATGACGAATCGAAAGATGTGGCTAAAGAAAAAAAGAAAAGAAAAGGCAAAGAGAGAAAGTTGAGAAGTAAAAAGAAGAAGTCGAAAAAAATGAGAATTTACGAACACACTAAAGCGAAGCTGTCCGATAGTCAAAAGATTAAAACTATCGAGTTGACATATGATGAAATGCTATCGGAGAGACAGAGTGATATTGTGAGAGACGATTACATAAAGTCCAAATACAAATGTGAAACTTGTATTGTCGGATTTAACTACATAAAATCGTATGAGAAACATAATAAGGAGAAGCATTCGTCGGACATTGGCGAATACAAGTGTCCGATTTGCAACACTGTCGTATCGACACTGGATGTGTTTACGGCGCATTACAAGAGACACTTGACCAGATACGAGTGCAGTATTTGCAACAAACGCACGCAAAACATGAAAGCTATGCACCGACATTACTTCACCAACCACGAGATATCTTTGAGGGAATATAATTGTAATATTTGCGGTAAAATATCAAACTCCATAGACAATCACAGAAACCACAAGGACACCCATAAAGCTCGGCTACAATGTCCCGAATGCGATAAAACTTTCAGTCATAGATCGGGACTCATGAATCATAGACATGCTGTGCATGAACATCGCAACGTATTCGCTTGCACGCAATGCGATAAAGTTTTCAAATGGAAGACCAGCCACAGAAGACACGTGGAGAGGCACGAAGCTAAGACAACATCGGCATCGGCGGCCTATTGCATTTCTTGCAATGTAAGCTTTTCCTCAGTCTTCACCTATCAGAGGCATCTCAAGCACAGCCTCAAACACGTCACTCAGGATCAGTTCAAATATATATGTGACCACTGCAACCGCAGATTTGCAGACAAAACCAAGTTGAGAGATCACATCGAGGAGAAACATttgaatagaaaatttcaatgtcacatttgtctcaagCCGTCGAAGAACCGCGTGGCGTTAGATCAGCACATAAGGAATATACACAAGGGAAGGCCGAACAACAAGATATGTCATCATTGCGGAAAGGGATTTCCTACCAAAGTCCAATTGGAGTCTCACATACGAACGCACACCAGAGAGAGGCCGTTCATATGCGAATATTGTCCGACAACTTTCTCGCAACAGAGCAATCTATACAAGCACAACAGACAGGTACACCTCAATATGAAATCGAAACGTCCAGCCTTAAATAAGAAAGAGAAAGTTTGTCCTTCAATTGTGACAACGAATCAAACGACAGCCGACGTCGAGTCTCGACCGATCGCTTTGTTCTATACGAACAGTACAGGTTTTGTAGTGTGA
- Protein Sequence
- MENKVNAVNQLCMSCLCVGRTLFQLNDESLKQYYMDLINEIPLCAISDAINDTNICFECVAILKKVIAFREQVKDSYRILLTYVTSENLRECLLADVSRPPRLKVQSNEAVVNIPGDELAVVAEETHSTQLVYVKSEVKREWEVELEGNSDNSDFKDNDENHLEEIDDESKDVAKEKKKRKGKERKLRSKKKKSKKMRIYEHTKAKLSDSQKIKTIELTYDEMLSERQSDIVRDDYIKSKYKCETCIVGFNYIKSYEKHNKEKHSSDIGEYKCPICNTVVSTLDVFTAHYKRHLTRYECSICNKRTQNMKAMHRHYFTNHEISLREYNCNICGKISNSIDNHRNHKDTHKARLQCPECDKTFSHRSGLMNHRHAVHEHRNVFACTQCDKVFKWKTSHRRHVERHEAKTTSASAAYCISCNVSFSSVFTYQRHLKHSLKHVTQDQFKYICDHCNRRFADKTKLRDHIEEKHLNRKFQCHICLKPSKNRVALDQHIRNIHKGRPNNKICHHCGKGFPTKVQLESHIRTHTRERPFICEYCPTTFSQQSNLYKHNRQVHLNMKSKRPALNKKEKVCPSIVTTNQTTADVESRPIALFYTNSTGFVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386142;
- 90% Identity
- iTF_01387902;
- 80% Identity
- -