Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000081.1:141419-157900[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0018 0.1 13.3 1.2 1 23 240 263 240 263 0.98

2 18 0.0038 0.21 12.3 0.2 2 23 373 395 372 395 0.96

3 18 0.21 12 6.8 0.3 2 23 397 419 397 419 0.94

4 18 0.00039 0.022 15.4 3.7 1 23 425 447 425 447 0.98

5 18 0.029 1.7 9.5 0.7 3 21 458 476 456 481 0.94

6 18 0.0082 0.46 11.3 4.3 1 23 485 508 485 508 0.93

7 18 1.6 93 4.0 2.9 1 12 514 525 514 533 0.85

8 18 0.0032 0.18 12.5 0.6 2 23 540 562 539 562 0.94

9 18 0.0074 0.42 11.4 0.5 1 23 776 799 776 799 0.98

10 18 0.38 22 6.0 0.4 3 23 816 836 814 836 0.91

11 18 0.00023 0.013 16.1 1.5 2 23 872 894 871 894 0.95

12 18 0.055 3.2 8.6 1.4 2 23 896 918 896 918 0.96

13 18 1.2e-05 0.00068 20.2 1.6 2 23 925 946 924 946 0.96

14 18 0.02 1.1 10.0 2.2 3 22 957 976 955 980 0.93

15 18 0.0074 0.42 11.4 1.9 1 23 984 1007 984 1007 0.91

16 18 8.3e-07 4.7e-05 23.8 3.6 1 23 1013 1036 1013 1036 0.98

17 18 0.028 1.6 9.6 5.2 1 23 1044 1066 1044 1066 0.96

18 18 0.00055 0.031 15.0 0.4 1 23 1072 1095 1072 1095 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0018	0.1	13.3	1.2	1	23	240	263	240	263	0.98
2	18	0.0038	0.21	12.3	0.2	2	23	373	395	372	395	0.96
3	18	0.21	12	6.8	0.3	2	23	397	419	397	419	0.94
4	18	0.00039	0.022	15.4	3.7	1	23	425	447	425	447	0.98
5	18	0.029	1.7	9.5	0.7	3	21	458	476	456	481	0.94
6	18	0.0082	0.46	11.3	4.3	1	23	485	508	485	508	0.93
7	18	1.6	93	4.0	2.9	1	12	514	525	514	533	0.85
8	18	0.0032	0.18	12.5	0.6	2	23	540	562	539	562	0.94
9	18	0.0074	0.42	11.4	0.5	1	23	776	799	776	799	0.98
10	18	0.38	22	6.0	0.4	3	23	816	836	814	836	0.91
11	18	0.00023	0.013	16.1	1.5	2	23	872	894	871	894	0.95
12	18	0.055	3.2	8.6	1.4	2	23	896	918	896	918	0.96
13	18	1.2e-05	0.00068	20.2	1.6	2	23	925	946	924	946	0.96
14	18	0.02	1.1	10.0	2.2	3	22	957	976	955	980	0.93
15	18	0.0074	0.42	11.4	1.9	1	23	984	1007	984	1007	0.91
16	18	8.3e-07	4.7e-05	23.8	3.6	1	23	1013	1036	1013	1036	0.98
17	18	0.028	1.6	9.6	5.2	1	23	1044	1066	1044	1066	0.96
18	18	0.00055	0.031	15.0	0.4	1	23	1072	1095	1072	1095	0.95

Sequence Information

Coding Sequence: ATGGATTTAAGAAAGGCACTAAATATTTGTCACGCGTGTTTGAGTTCAGATCGTCAATTATATCCCGTCTCGAAGTGCTCAATTCAGCTTGGTTTCTTGCCGTCTGATGACATATTATGTCTAAGTACTTTGGCCATTTCAAAGCAGCAATCTTTCTTTGAATTCAAACATATTGATGACCCTCTAACCCTAGAAGAGTTTGACAAAGCCACAAGTATCAATGAAGAAGTATGTAGTTCAGACACAGAAACCGCCTCATACCATGAAGACTATGAGCAAACAGATAGCGCACAGGAAGATATTGAAGATCATTTAGAGGAAAATTTAATAAACATTGAGAATGTTGATAAAAAAATATTTGAGTCACAAACAAACATCAATCTGCATATTAAAACAGAAATTGATATGGATAAACAAGAAATGTTTGAGTCTCAAACAAACACCAATGTGCATATTAAAACAGAAATTGATAAGGATATACAAGAAATGTTTGAGTCTCAAACAAACACCAATCTGCATATTAAAACCGAAATTGATATGGATAAACAAAGAATTGCATACAATAAAAAGATTGAAACTCTTTTAGATATTGACAACAAATTATCAGAAGTGTCTGAAGAAGTGATGAAGAAGATATTAGTAACGAAATTGACTCACGAGGAAGTACTTAAGAAAAGAGATCAGAAGAAGAGAAGTCACAGATATCAGAATTGTCTTTACAAATGCAAAATTTGTATTGCAGGCTTTAGAACTAAGGAATATTTCAATGAACACATGAAAGTGAAGCACAGTCATATAGATTATAATAATGTGGTGAGTGAATGTACTGGTTGGGCAGAGCAAAGAATCGCCGCAATGCACTCTATTAGAGATGGCACGGTCAAGGCTTTCCATACAAAACCAGCGTGTCAGAACAAACTAGGGGAGCTCACAGATTGCGACGTCTGTAAAATACGCTTCAAATCGCTAATTGTAGCGCAGAGACATTGCGAACGTCATTACATGCGCTACAAATGTCGACTGTGCGGATATGAAGCCTACGCTCTATTCGTCATTGTGGCGCACTGTGAGGATAAACACGAGACGGAAACAGTCGAACAGATACCTGTGACCTTGACCTGTGAATTTTGCTCGAAGGTTTTATCCACCCCTGAGGAGTATTCGGAACACTTGAATACAGAACATAGGACTTGTGAATTATGTGATTATAAAGTGAAAGGAAGGGGTTCGATTAGAAATCATATGAGTCTAATGCACCCAAAAAAAGGATACTTCAATTGCGATCACTGTCGAAAATTTTTTAAGAGTAAGACTGTGTTGGAAATGCACATGGCCACTCATGGTGAGAATATAGCGAAGAAACTGTCGCATTGCAACATTTGCAATGTGCAATTTAAAAATATTCATGCATATATGGCACATATTAGAGCAAGTGCGAATCACCGGAAAGGATATAAATGTCCTGAATGCAATAAACACTTCGCTACGGAATCTTATGGGAGAAAGCATTATAAATTTTATCATCTAAAGGAATCAAAGTACAAATGCGAAGAGTGTAACAAATGTAGTACGACAATGAATAAACACAAGTCAGTTCACTCGGAGCAGCGTCACCTCATGTGCTCGGAGTGCGGCGACACCTTCAAGCACTCCGCGGCTTTGTTAACGCACACGAAGCTAGTGCATAGACTTGGAAAGAAGCTTTATAAAAAGCAGAAGATTAATGATAACATATTATGTCTTAGTACTTTGGACATTTCAAAGCAGCAACCTCTCTTTGAATTCAAACATATTGATGACCCTCTAACCTTAGAGTTTGACGAAGCCACAAGTATTAAGGAAGAAGTATGTAGTTCAGACACAGAAACTGCCACATACCATGAGCAAACAGATAACACAGAGGAGAATATTGAAGATAATTTAGAGGAAAATTTAATAAACATTGACAATGTTGATAAAAAAATGTTTGAGTCACAAACAAACACCAATGTGCATATTAAACCAGAAATTGATAAGGATAAACAAGAAATGTTTGAGTCACAAACAAACACCAATGTGCATATTAAAACAGAAATTGATAAGGATAAACAAGAAATGTTTGAGTCACAAACAAACACCAATCTGCATATTAAAACGGAAATAGATAAGGATAAACAAGAAATTATATTTAAAAAAAAGCTTAAAACTCTTTTATATGTTGACAACAATTTATCAGAAGTGTCTGAAGAAGTTATGAAGAAGATATTAGTGACGAAATTAACTCACGAGGAAGTACTAAAGAGAAGAGACCAGAAGAGGAGTCGTCGCAAATATCAGAATTCTCTTTACAAATGCGATTTTTGTATTTTAGGCTTTATAAATGAGGAGTATTTGAATGACCACATGAAGACAAGGCACAGTCATATAGATTATAATAATGTGAACAAACCAGGGGAGCTCACAGATTGCGACATCTGTAAAATGCGCTTCAAATCGCCAATTGTAGCGCAGAAACATAGCGAGCGTCATTACATGCACTACAAATGCCGACTGTGCGAATATGAGGCCTGCTCTCTATTCGTCATTGTGGCGCACTGTAAGGACAAACACGACCGCCAAACAGTCGGACGGACACGTTGTAAACATTGCTCGAAGGTTTTTTCCACCCCTGAGGAGTATTTGGTACATTTTAAAATAGTACACGGGACTTGTGAGTTATGCGGTTATAAAGTGCAAAGAAATCGTTCGATGAAATATCATATGAGTAAAATGCACTCGCAAAAAGTCAACTTAATCTGCGATCACTGTCCAAAAACTTTTAGGACCAGGTATAGGTTGGAACTGCACATGGCTACTCATGGTGAGAATATAGCAAAGAAACTGTCGCATTGCAACGTTTGCAATGTGCAATTTAAAGATATACATAATTATAGGGCACATCTTAAAACCAGTGTGAATCACGTGAAAGGATATCAATGTCCCGAATGCAATAAAAAGTTTGCTTCGGAAGTTTATGGGAGGAGGCATTATAAATTTTTTCATCTAAAAGAAACCGAGTTCAAATGCGAAGAGTGTAACAAAATGTTTGTGACAAAGTCGCATTTGAAGGAACATTGGCGGAAGAGTCACGGACTGCGTAGACCAAGAAATCATGAATGCGATGTTTGCGGAAAGAAATTCTATTGTAGTTCGACATTAAAATCGCACAAGTTACTTCACTCGGAGCAGCGTCCCTTCATGTGCTCGGAGTGCGGTGACACCTTCAAGCAGTCCGGGGCTTTGTTCACGCACACGAAGTTAGTGCATAGACTTGGAAAGAAGCTTTATAAAAAGCAGAAGATTATACGTGAATAA
Protein Sequence: MDLRKALNICHACLSSDRQLYPVSKCSIQLGFLPSDDILCLSTLAISKQQSFFEFKHIDDPLTLEEFDKATSINEEVCSSDTETASYHEDYEQTDSAQEDIEDHLEENLINIENVDKKIFESQTNINLHIKTEIDMDKQEMFESQTNTNVHIKTEIDKDIQEMFESQTNTNLHIKTEIDMDKQRIAYNKKIETLLDIDNKLSEVSEEVMKKILVTKLTHEEVLKKRDQKKRSHRYQNCLYKCKICIAGFRTKEYFNEHMKVKHSHIDYNNVVSECTGWAEQRIAAMHSIRDGTVKAFHTKPACQNKLGELTDCDVCKIRFKSLIVAQRHCERHYMRYKCRLCGYEAYALFVIVAHCEDKHETETVEQIPVTLTCEFCSKVLSTPEEYSEHLNTEHRTCELCDYKVKGRGSIRNHMSLMHPKKGYFNCDHCRKFFKSKTVLEMHMATHGENIAKKLSHCNICNVQFKNIHAYMAHIRASANHRKGYKCPECNKHFATESYGRKHYKFYHLKESKYKCEECNKCSTTMNKHKSVHSEQRHLMCSECGDTFKHSAALLTHTKLVHRLGKKLYKKQKINDNILCLSTLDISKQQPLFEFKHIDDPLTLEFDEATSIKEEVCSSDTETATYHEQTDNTEENIEDNLEENLINIDNVDKKMFESQTNTNVHIKPEIDKDKQEMFESQTNTNVHIKTEIDKDKQEMFESQTNTNLHIKTEIDKDKQEIIFKKKLKTLLYVDNNLSEVSEEVMKKILVTKLTHEEVLKRRDQKRSRRKYQNSLYKCDFCILGFINEEYLNDHMKTRHSHIDYNNVNKPGELTDCDICKMRFKSPIVAQKHSERHYMHYKCRLCEYEACSLFVIVAHCKDKHDRQTVGRTRCKHCSKVFSTPEEYLVHFKIVHGTCELCGYKVQRNRSMKYHMSKMHSQKVNLICDHCPKTFRTRYRLELHMATHGENIAKKLSHCNVCNVQFKDIHNYRAHLKTSVNHVKGYQCPECNKKFASEVYGRRHYKFFHLKETEFKCEECNKMFVTKSHLKEHWRKSHGLRRPRNHECDVCGKKFYCSSTLKSHKLLHSEQRPFMCSECGDTFKQSGALFTHTKLVHRLGKKLYKKQKIIRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -