Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000056.1:329499-331340[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.055 3.1 8.7 2.2 1 23 36 58 36 58 0.96

2 16 0.42 24 5.9 0.1 2 23 87 109 86 109 0.87

3 16 0.051 2.9 8.8 0.1 2 23 130 152 129 152 0.94

4 16 0.00031 0.018 15.7 2.2 2 23 158 180 157 180 0.95

5 16 0.021 1.2 10.0 0.3 1 23 185 208 185 208 0.96

6 16 0.27 15 6.5 0.2 2 23 211 233 210 233 0.94

7 16 0.012 0.71 10.7 1.2 2 22 240 260 239 260 0.93

8 16 0.0024 0.14 12.9 0.6 1 23 317 340 317 340 0.93

9 16 1.1 61 4.6 0.0 3 23 369 390 367 390 0.91

10 16 0.032 1.8 9.4 0.2 3 23 414 436 412 436 0.96

11 16 0.00042 0.024 15.3 0.6 3 20 443 460 441 464 0.90

12 16 0.0067 0.38 11.5 0.4 1 23 469 492 469 492 0.97

13 16 8.5e-05 0.0048 17.5 0.3 2 23 498 520 498 520 0.94

14 16 6.9e-05 0.0039 17.8 4.7 1 23 524 547 524 547 0.97

15 16 4.9e-05 0.0028 18.3 0.7 2 23 554 575 553 575 0.97

16 16 0.0021 0.12 13.1 2.3 1 23 581 603 581 603 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.055	3.1	8.7	2.2	1	23	36	58	36	58	0.96
2	16	0.42	24	5.9	0.1	2	23	87	109	86	109	0.87
3	16	0.051	2.9	8.8	0.1	2	23	130	152	129	152	0.94
4	16	0.00031	0.018	15.7	2.2	2	23	158	180	157	180	0.95
5	16	0.021	1.2	10.0	0.3	1	23	185	208	185	208	0.96
6	16	0.27	15	6.5	0.2	2	23	211	233	210	233	0.94
7	16	0.012	0.71	10.7	1.2	2	22	240	260	239	260	0.93
8	16	0.0024	0.14	12.9	0.6	1	23	317	340	317	340	0.93
9	16	1.1	61	4.6	0.0	3	23	369	390	367	390	0.91
10	16	0.032	1.8	9.4	0.2	3	23	414	436	412	436	0.96
11	16	0.00042	0.024	15.3	0.6	3	20	443	460	441	464	0.90
12	16	0.0067	0.38	11.5	0.4	1	23	469	492	469	492	0.97
13	16	8.5e-05	0.0048	17.5	0.3	2	23	498	520	498	520	0.94
14	16	6.9e-05	0.0039	17.8	4.7	1	23	524	547	524	547	0.97
15	16	4.9e-05	0.0028	18.3	0.7	2	23	554	575	553	575	0.97
16	16	0.0021	0.12	13.1	2.3	1	23	581	603	581	603	0.97

Sequence Information

Coding Sequence: ATGCGGAAATACAAAGGAAGCGAATCGTCATCGGTGAGAAGGAGGAAAAATTTGCAAGTTTTATTCAACAACACTACGATAATACCGTTCAAATGGAGGGGGAAATATTTATGCTTCTATTGTAGCAAAGATATGACCGAGTACTCGGAGTTGAGAAAACATACCAAGTCGCACGGAAACTGTTCAACCAAGGATCATTCGTTGAAAGTTTTGAAGGGAGGACAGAATATGGAAATAAAAATTGACATATCTGATATTTCTTGTGAGATTTGCAACGAAATATTCCAAAGTTTCGACGAAATTGTCGATCACTTGTACCTGAAACACAAACTAGTTTACGACAGAACCGTAGAAATGGCCATAGAAGAGTACAGGCTGAGCAATTTGAGTTGTTTGATTTGCGAGGAAAAATTCGCATATTTCGGTTACCTAGTCTCGCACGTCAACAATAATCATCCGAAGAAATGCCTCATTTGCGACCAGTGCAACCAAAAGTTCAATAAAAAGAGAGATTTGTTCTCTCACATGAAGAATTATCACAGGGAAGGCGGTTACCAATGCGACGCGTGTCCCCAAGTGTTCGCGTCATTGAATATTTTACGCAAACATAGAAACAACAGGCACCTGACCAGATGTAACATATGCCAGTTGAAGTTACCATCGGCCGTTTTAAAACAGAAACACATGGAGTTGGAACACCCGGACGACGGGTCTTTACAGTGTGATAACTGTTCCAGAGAGTTTCACACGAAACAAGGCCTAAAGATGCACGCGCGAAAATGCAAAGAAGACTCGTTTGAAATGGACATAAAAAAAGAGAGTCACGAATTGGATTTAGATGAAAATTACGAGGAGGTGAAACGTCCGAGCGTCAAGCAAATTAGACAGAATATTGTCTTGGTCATAAACATGTCGACGGCTATACCTTTTAACTTCTACAAGAATAAATTTAATTGCTTCTACTGCTCCAAAGATTTTCCGGATTCGGATTCGATGAGGGAACACACCGTTATGGAGCATCCCGTATGCGATGTCAAAGAGAAATGCATCAGAAAGTGCAGGGAATCGGTTGCTTGCGTTAAAATCGATATTTCTTCGCTAGCGTGCAAAGTTTGCTTCGAATCGATGGCCGATTTGGACTCGTTGATCGATCATTTGATCGGCAAACACGAGGCCGACTACGACAAGACGATCACAACTTGTCTACAACCCTATAGACTGATCAAAGATCACATGGCGTGTCCCAATTGTCCGGCGGAAGTGTTTAGATTTTTCGGAACTCTACTCAAACACATGAACAAGAAACACACGAACAATAACATTATATGCGTCTATTGTGGTCAAACATTCCGTAGGGATCAGAATTTGAGGGTTCACATTTGGAGGCATCACAGAGACGGTAGATTCAAGTGTAACATATGTGGTGCCGAGTGTAATATTCCTTCGCGTTTGTACATGCACATGGCAAAGGCTCACGGTGTTAAGGCGGCCAAGTGTCCCAAATGTGGGGAGACTTTCGCCACGCAATATCTGCGTCAGAAACATCTGATCGAAGCTCACGATTCGGGTCACAAGTGCAATTATTGCGGTAAACTTTTCACGAGAAATTCGTTCATGAGAGATCACGTTAGGAGGACGCATTTGAAGGAGAAAAATGTGGAATGCACCATTTGTAACATGAAGTTTTTTAATAATATTCTACTAAGACGGCACATGATTAAACATAGCGGCGAGAAAAATTTCCATTGCGACATATGCGGGGAGAGATTTTTCTGGAGGAAAAGTTTGAGGACTCACATGGCTAGGCATAGTAAATTGCTCAGTCCCATTTTGCACGTATAA
Protein Sequence: MRKYKGSESSSVRRRKNLQVLFNNTTIIPFKWRGKYLCFYCSKDMTEYSELRKHTKSHGNCSTKDHSLKVLKGGQNMEIKIDISDISCEICNEIFQSFDEIVDHLYLKHKLVYDRTVEMAIEEYRLSNLSCLICEEKFAYFGYLVSHVNNNHPKKCLICDQCNQKFNKKRDLFSHMKNYHREGGYQCDACPQVFASLNILRKHRNNRHLTRCNICQLKLPSAVLKQKHMELEHPDDGSLQCDNCSREFHTKQGLKMHARKCKEDSFEMDIKKESHELDLDENYEEVKRPSVKQIRQNIVLVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVMEHPVCDVKEKCIRKCRESVACVKIDISSLACKVCFESMADLDSLIDHLIGKHEADYDKTITTCLQPYRLIKDHMACPNCPAEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCGETFATQYLRQKHLIEAHDSGHKCNYCGKLFTRNSFMRDHVRRTHLKEKNVECTICNMKFFNNILLRRHMIKHSGEKNFHCDICGERFFWRKSLRTHMARHSKLLSPILHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_01388784; iTF_01386072;
80% Identity: -