Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000085.1:1191070-1201462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0013 0.074 13.8 3.2 1 23 19 41 19 41 0.97

2 10 0.00022 0.013 16.2 0.5 1 23 47 69 47 69 0.94

3 10 2.9e-06 0.00017 22.1 2.6 1 23 75 97 75 97 0.96

4 10 1.5e-06 8.5e-05 23.0 5.1 2 23 104 125 104 125 0.98

5 10 0.00092 0.052 14.2 5.2 1 19 209 227 209 231 0.94

6 10 0.00013 0.0073 16.9 0.7 3 23 238 258 237 258 0.98

7 10 3.7e-05 0.0021 18.6 6.0 1 23 306 328 306 328 0.97

8 10 0.0026 0.15 12.8 1.6 2 20 335 353 334 354 0.94

9 10 8.6e-05 0.0049 17.5 8.3 1 23 436 458 436 458 0.98

10 10 1.1e-06 6.2e-05 23.4 4.6 1 23 464 486 464 486 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0013	0.074	13.8	3.2	1	23	19	41	19	41	0.97
2	10	0.00022	0.013	16.2	0.5	1	23	47	69	47	69	0.94
3	10	2.9e-06	0.00017	22.1	2.6	1	23	75	97	75	97	0.96
4	10	1.5e-06	8.5e-05	23.0	5.1	2	23	104	125	104	125	0.98
5	10	0.00092	0.052	14.2	5.2	1	19	209	227	209	231	0.94
6	10	0.00013	0.0073	16.9	0.7	3	23	238	258	237	258	0.98
7	10	3.7e-05	0.0021	18.6	6.0	1	23	306	328	306	328	0.97
8	10	0.0026	0.15	12.8	1.6	2	20	335	353	334	354	0.94
9	10	8.6e-05	0.0049	17.5	8.3	1	23	436	458	436	458	0.98
10	10	1.1e-06	6.2e-05	23.4	4.6	1	23	464	486	464	486	0.97

Sequence Information

Coding Sequence: ATGTCAAGAAGTAAATTGGCCATCATTATAAAAGATGAAGATGATGTAACACAGTTTTGTTGTGTAGAGTGTCCACTACGCTACACAGAAAAAGAGGAGCTCGAAAAACATTTGTGCACCCATTACCAGGAATATAAATTTCTATGCGGCATCTGTGGTACAGGGTTGAAACGTAAAGAACATCTAGACAGACATATGCTTGGACATCAGGAAGTAAGACCGCATGTTTGCGAGGAATGTGGAAAAGGTTTTAAACGGAAAGAACATTTAAACATTCACAAATCCATACATTCAGGAGAGAAGGGTGAACAATGTACACTTTGTAATAAATCATTTTACCGCAAGGACCACCTTCAGAAGCATCTTCAAACTCACTCGAAAGCATTTGTGGATAAAAATGGGCAATTATTTGGTGAAGAGTTGAATATCAAAGAGGAACCGATAAATGGTGACGATGCAGACAGTGAAATGCAAAGTTTAATCATGAATTATTCCAATTTTGTGAATGTCAAAATGGAAACACCAGAGACAGATGACTCTCAACAAGATAATGAGGGCATTTCAGATGGTGATCAAGGTTACAATTCTGCTGGTTTTTGTGTCACAGTTCATAATGAACGACCCTATGTGTGTTGTGTATGTAAAAAAAGTTATAAAAGGAAAGACCATTTGAAAATACACAGTTGGACCCATTTGAAGAAGGACAAGATTTGCTCAGAATGTGGCGAAGGTTTCCATAGGGACGAACAACTCCTGACTCACATGAATACGCATCTGAAGCAGTATTCTGATTACAACGCCAAAGATGAATATAGCATACCGAATAGAAAAAATGTCAAACTGGAAAATGATTATATCATCGACGAAACGTCTACTTATACGCCCAGAAAGAGCCAAATTACGGATTGTAGGCCGCACGAGTGCCCCGTGTGTCATAGAAAATTCAAAAGGAAACAACACCTCAAAGTGCACGCCAACATACATCTCAGGAACCAATCCACTGTCTGCTCACATTGCAATGAAGCATTCAGTAGCACCAACCAGTTAGAAAACCACGTCTGCCCAGTGTCCACTCTGAGCAGCAATGAGTACATTTTACCCATTGACCGCGAACCACAGTGGGAGGAACCGCAGAAGCAGGCGAAGAAAGAGAACGAAATGCCGCACGAATATATAAACATAATACCAGAAGAGCATCTGATCGAGCGGCCCATGGAGCAGATGTTGAACATAGCCATAATGCAAGACTCCAATCCACCGCCGGCGCCTTGCGAGGAGAGCGGTCTGCCGGTCCCGCAGCGCGTCTACGTCTGCAAGTTCTGCACCAAGACCTTCAAGCGGAAGGATCACTTCAAAATACACCAGCACATACACACCGGCGTCAAGTCCTTCTTCTGTCCGCACTGTGGAAAAGGTTTCTACCGCAAAGATCACATGCAGAAACACATGCTCATACACAAGCCGAAGACGGATCGCAAAAAGGAGTTGCCTGACTTGTTTCCAATTTCGATGTTGGCTGGATCGTCGGCTTCCTCCACCAACGATGCAGTCAAACCAGAGATTACTATACGAGCACCGGCAAGCTCGAAGCTTCGTGTGCCGCTTCAGATGAAAGTGCCGTACCAGATGGTCGTCTCCCTCGAGAACGGCGAACGGCGATCGCTCAACGTCACACCACGTGACTCCTGA
Protein Sequence: MSRSKLAIIIKDEDDVTQFCCVECPLRYTEKEELEKHLCTHYQEYKFLCGICGTGLKRKEHLDRHMLGHQEVRPHVCEECGKGFKRKEHLNIHKSIHSGEKGEQCTLCNKSFYRKDHLQKHLQTHSKAFVDKNGQLFGEELNIKEEPINGDDADSEMQSLIMNYSNFVNVKMETPETDDSQQDNEGISDGDQGYNSAGFCVTVHNERPYVCCVCKKSYKRKDHLKIHSWTHLKKDKICSECGEGFHRDEQLLTHMNTHLKQYSDYNAKDEYSIPNRKNVKLENDYIIDETSTYTPRKSQITDCRPHECPVCHRKFKRKQHLKVHANIHLRNQSTVCSHCNEAFSSTNQLENHVCPVSTLSSNEYILPIDREPQWEEPQKQAKKENEMPHEYINIIPEEHLIERPMEQMLNIAIMQDSNPPPAPCEESGLPVPQRVYVCKFCTKTFKRKDHFKIHQHIHTGVKSFFCPHCGKGFYRKDHMQKHMLIHKPKTDRKKELPDLFPISMLAGSSASSTNDAVKPEITIRAPASSKLRVPLQMKVPYQMVVSLENGERRSLNVTPRDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388768;
90% Identity: iTF_01387828; iTF_01388768;
80% Identity: -