Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000066.1:291766-296570[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.3e-05 0.00076 20.0 0.3 2 23 225 246 225 246 0.97

2 11 0.0027 0.16 12.8 2.3 1 23 249 272 249 272 0.97

3 11 1.5 86 4.1 3.0 3 23 279 300 278 300 0.88

4 11 3.1e-05 0.0018 18.9 3.7 1 23 303 325 303 325 0.96

5 11 0.00016 0.0091 16.6 2.6 1 23 331 353 331 353 0.99

6 11 1.1e-06 6.5e-05 23.4 0.3 1 23 359 382 359 382 0.96

7 11 0.15 8.5 7.3 0.3 1 23 388 410 388 410 0.97

8 11 4.4e-08 2.5e-06 27.8 0.9 1 23 416 438 416 438 0.98

9 11 8.2e-05 0.0046 17.6 1.9 1 23 444 466 444 466 0.97

10 11 1.6e-05 0.00092 19.8 6.2 1 23 472 494 472 494 0.99

11 11 0.00014 0.0078 16.8 1.2 1 23 499 521 499 521 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.3e-05	0.00076	20.0	0.3	2	23	225	246	225	246	0.97
2	11	0.0027	0.16	12.8	2.3	1	23	249	272	249	272	0.97
3	11	1.5	86	4.1	3.0	3	23	279	300	278	300	0.88
4	11	3.1e-05	0.0018	18.9	3.7	1	23	303	325	303	325	0.96
5	11	0.00016	0.0091	16.6	2.6	1	23	331	353	331	353	0.99
6	11	1.1e-06	6.5e-05	23.4	0.3	1	23	359	382	359	382	0.96
7	11	0.15	8.5	7.3	0.3	1	23	388	410	388	410	0.97
8	11	4.4e-08	2.5e-06	27.8	0.9	1	23	416	438	416	438	0.98
9	11	8.2e-05	0.0046	17.6	1.9	1	23	444	466	444	466	0.97
10	11	1.6e-05	0.00092	19.8	6.2	1	23	472	494	472	494	0.99
11	11	0.00014	0.0078	16.8	1.2	1	23	499	521	499	521	0.97

Sequence Information

Coding Sequence: ATGGCTAACACATCAAATCTAATACCTTTATGTAGATGTTGTCACAAGAATGGTGTCTTCAAGAGTCTATTCTACGACTTTATTTACGGCAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTCGGAATTTCTTTTGTATCCCTAGAATCAGAATGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGATTCTCAACAGAATTCAAGATTGGTGTTCTTGCCTGTGAAAAAACTATTGAACGTGACCCATCAATGAGAAGCGATGTGACATTTAAAATAGAAAAAATGTGGAGTTATTCGTGCAGTGATAAAGTAGGACCGTTTATAGATGACATCACCAAAATTAAAAGTGAAGAAACCAACAATGACGTAGATAGTGCCATAGGTGTAAATTTAGATGAAGAGTGCAATGAAGATGTCAGGATCGAAGAGAGTGGAGACGGATCAGATGAAACTTTTTGTGAATCTGAAAAACAGATAATAACACACGAAACTAACGTTAAAAGCGTAGAGACCGCTAATGATGAAGAGAGAACAAGTATAAATAAGATTTTAGATGAAGAGTCCAATAAAGATGTCAGAATTGAAGAGAGCGGAAACAAATCAAATGAAATTGTCAGTGAATCTGGTGGGATCAAGAAGCACGAGAATGAATGCAATATTTGCAGTAAAACTTTTATATTTAAAGGTGCTCTAGAAAATCACGTCAGATCTCACAACTGTCATAAATGTCAATTTTGTGCAAAAATACTGTCGAATAAGAGAGAGCTCGCAAACCACATTAAGTCGAAACACTTTGTTGATGGCAAATTTTGCTGTATCGTTTGCGATGAGACTTTTTTGGAAGTGCAAAAGCTGAATCATCACATCAAAACGCACATTAGACATCGCTGTGACATGTGCAATAAGGATTTTAAGTACAAAAGTGAATTGCGCAAACATGAAACTGTCCACAACGATAAGAGAAAGTTTAAATGCTCAATATGTAATAATCTTTTTATAAAACAACATTCGTTGAAGGTTCACATGGAAACACACGCCCGAGGAAAACCATACGAGTGTCAAGATTGTGGAGAAATATTCACAACCCGAAGAAATTTAGAATGGCATAGACAGAATGTGCATATGGATGTAAAAAAGTACAGTTGTTGGTATTGCGCAAAGGGTTTTTTTTGGAAAAATCGTTTGATCGCACACGAAAGGGTACACACGGGTGAAAAACCGTACATGTGCGATAAATGCAATAAATCATTTAGAAGTAAAGATGATTTGATTAGTCATATAAGAGTGCATGTGGAAAATAAGCCTTACATTTGTAGCGTGTGTGATTTTAGATTTAAAACAAGAAAAACTCTCAACAGCCACTTGGTGAAGCATACTAAGATGAAAAATTTTCAATGCAGTCTTTGTAGGAAGACATTTGTACATAAACATTATCTTACCATTCATATGAAGGTTCATGGCATGGGAAAATACGAGTGTGATATTTGCAAAAATACGTTTAAATACAAGCAAGATATACGCAAGCACATGTTGGGACATTACAGCTTCAACTGA
Protein Sequence: MANTSNLIPLCRCCHKNGVFKSLFYDFIYGNEIENYSQMLYDTFGISFVSLESECDKIYTICDECIEKLRFSTEFKIGVLACEKTIERDPSMRSDVTFKIEKMWSYSCSDKVGPFIDDITKIKSEETNNDVDSAIGVNLDEECNEDVRIEESGDGSDETFCESEKQIITHETNVKSVETANDEERTSINKILDEESNKDVRIEESGNKSNEIVSESGGIKKHENECNICSKTFIFKGALENHVRSHNCHKCQFCAKILSNKRELANHIKSKHFVDGKFCCIVCDETFLEVQKLNHHIKTHIRHRCDMCNKDFKYKSELRKHETVHNDKRKFKCSICNNLFIKQHSLKVHMETHARGKPYECQDCGEIFTTRRNLEWHRQNVHMDVKKYSCWYCAKGFFWKNRLIAHERVHTGEKPYMCDKCNKSFRSKDDLISHIRVHVENKPYICSVCDFRFKTRKTLNSHLVKHTKMKNFQCSLCRKTFVHKHYLTIHMKVHGMGKYECDICKNTFKYKQDIRKHMLGHYSFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -