Sfor014675.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000122.1:38026-39781[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3e-06 0.00017 22.1 0.6 2 23 134 155 133 155 0.97 2 9 9.1e-06 0.00052 20.6 0.1 2 23 163 184 162 184 0.97 3 9 0.00013 0.0075 16.9 0.3 1 23 190 212 190 212 0.97 4 9 1.1e-05 0.0006 20.3 2.0 1 23 218 240 218 240 0.96 5 9 5.6e-06 0.00032 21.2 0.2 3 23 248 268 247 268 0.98 6 9 9.8e-05 0.0055 17.3 1.7 3 23 276 296 275 296 0.98 7 9 7.4e-06 0.00042 20.8 0.9 1 23 302 324 302 324 0.97 8 9 8.3e-05 0.0047 17.5 0.7 1 23 330 352 330 352 0.98 9 9 0.0045 0.26 12.1 5.9 1 23 358 380 358 380 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAGGAATTGTTGGATTTTAAAAATATATGTCGCGCTTGTTTGGGTGACGCCCAACCTCTGAAGAATATCTCGGACGTTTGTTCCCCCGACGTGTTCAAGTATTGCACTTCCGTAGAGATATCCGAGCAAGACCTGTTGCCCCAGCAGATGTGCCAGTGCTGTATGGATAACTTGAACAAGTTCTATTATTTTAAGCAATTAGTGATAAGGTCCAACATTATATTGAAACAGCAACTGTCTACACAGGTGAAAGACGAGAGACGCAATGACAATAATGAAATGCTTGAAGTGAATTTGACAGAATTTAATAATGATGTAAACATGCTGGACAGTTCAACGGTGGATGATGAATCTCAAATTAAAAAGAAGAGGAGGAAGGGGCCGGCGCGCATGAAGTGCGCCAAGTGCGACAAGAGCTTCCAGAAGTATGAGAACCTGGAGGCGCACATGCGCGCGCACTTCGGGAAGAAGCCGGACATAAAGTGCGCGCAGTGCGACAAGGCGTTCGCGACGGCGCGCAACCTGGCGTCGCACGCGCGCGTGCACTCGGGCGTGCGCCGCTACCAGTGCCTCACGTGCGGCAAGAGCTTCGCCTATCTCAACGTGCTCAAGAACCACGAGCTAATCCACGCGGGCGTCAAGGACCACGCGTGCCATCTGTGCGACGCGCGCTTCGTGCAGCCCTACAACCTCAAGACGCACCTCGAAACGCACGGCGCGCACAAGAGCCACGGCTGCTTCCAGTGCGGCAAGCGGTTCGCGCAGCCCGGCAACCTCAAGATCCACCTCATCCGCCACACTGGCGTCAAGAACGTCGCCTGCTCGCTCTGCCACATGCGCTTCTACGTCAAGGGCGACCTGCTCAAGCACATGCGCTCGCACTCGGCCGCCAAGCCCTTCGCGTGCGCGCTGTGCGACAAGCGCTTCAAGAGCCGCTCCTTCCTGCAGGTGCACGCGCGCTCGCACTCCGGTGAGCGCCCCTACGCTTGCGACCTCTGCCCCAAGCGCTTCATGGCGCGCAAGGACCTGCGCAACCACCGCATGACGCACACGGGCGAGCGCCCGCACAAGTGCCGCCACTGCGCGCAGGCCTTCATCCAGAAGTGCGCGCTCAACCGCCACCTCAAGGGCCACGCGCGCGCCGACCGCCCCTCCCTCCCGCCTATGCCCATGCCCGGCTTCCTCCCCTAG
- Protein Sequence
- MEEELLDFKNICRACLGDAQPLKNISDVCSPDVFKYCTSVEISEQDLLPQQMCQCCMDNLNKFYYFKQLVIRSNIILKQQLSTQVKDERRNDNNEMLEVNLTEFNNDVNMLDSSTVDDESQIKKKRRKGPARMKCAKCDKSFQKYENLEAHMRAHFGKKPDIKCAQCDKAFATARNLASHARVHSGVRRYQCLTCGKSFAYLNVLKNHELIHAGVKDHACHLCDARFVQPYNLKTHLETHGAHKSHGCFQCGKRFAQPGNLKIHLIRHTGVKNVACSLCHMRFYVKGDLLKHMRSHSAAKPFACALCDKRFKSRSFLQVHARSHSGERPYACDLCPKRFMARKDLRNHRMTHTGERPHKCRHCAQAFIQKCALNRHLKGHARADRPSLPPMPMPGFLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387819; iTF_01386062; iTF_01388760;
- 90% Identity
- iTF_01387819;
- 80% Identity
- -