Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000091.1:452909-458449[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.6e-05 0.00091 19.8 0.8 2 23 182 203 181 203 0.97

2 14 0.0053 0.3 11.8 1.5 1 23 206 229 206 229 0.97

3 14 0.00013 0.0071 17.0 4.8 1 23 260 282 260 282 0.98

4 14 0.0043 0.24 12.1 1.2 1 23 288 310 288 310 0.99

5 14 0.21 12 6.8 6.5 1 23 316 339 316 339 0.89

6 14 6.1e-06 0.00035 21.1 1.5 1 23 345 367 345 367 0.98

7 14 3.7e-05 0.0021 18.6 1.1 1 23 373 395 373 395 0.95

8 14 0.0014 0.082 13.6 0.9 1 23 401 423 401 423 0.97

9 14 2.6e-07 1.5e-05 25.4 0.8 2 23 439 460 438 460 0.97

10 14 0.00013 0.0074 16.9 4.4 1 23 466 489 466 489 0.97

11 14 0.00079 0.045 14.5 4.2 2 23 502 524 502 524 0.96

12 14 0.00012 0.0069 17.0 3.1 2 23 537 559 537 559 0.94

13 14 9.6e-05 0.0055 17.3 4.0 2 23 572 594 572 594 0.96

14 14 2.3e-07 1.3e-05 25.6 1.0 3 23 609 630 608 630 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.6e-05	0.00091	19.8	0.8	2	23	182	203	181	203	0.97
2	14	0.0053	0.3	11.8	1.5	1	23	206	229	206	229	0.97
3	14	0.00013	0.0071	17.0	4.8	1	23	260	282	260	282	0.98
4	14	0.0043	0.24	12.1	1.2	1	23	288	310	288	310	0.99
5	14	0.21	12	6.8	6.5	1	23	316	339	316	339	0.89
6	14	6.1e-06	0.00035	21.1	1.5	1	23	345	367	345	367	0.98
7	14	3.7e-05	0.0021	18.6	1.1	1	23	373	395	373	395	0.95
8	14	0.0014	0.082	13.6	0.9	1	23	401	423	401	423	0.97
9	14	2.6e-07	1.5e-05	25.4	0.8	2	23	439	460	438	460	0.97
10	14	0.00013	0.0074	16.9	4.4	1	23	466	489	466	489	0.97
11	14	0.00079	0.045	14.5	4.2	2	23	502	524	502	524	0.96
12	14	0.00012	0.0069	17.0	3.1	2	23	537	559	537	559	0.94
13	14	9.6e-05	0.0055	17.3	4.0	2	23	572	594	572	594	0.96
14	14	2.3e-07	1.3e-05	25.6	1.0	3	23	609	630	608	630	0.96

Sequence Information

Coding Sequence: ATGGCTGAAACATTGAACCCAAGCCAGTTTTGTAGATGTTGTCACAAGAATGGTGATTTCAAGTGTGTATTTTCCGACTTCATTTACGAGAATGAGGTTGAAAATTATTCGCAGATATTGTACGATACATTCGGAATCTCATTTGAGCCCTCGGAACATTACAAAATGTGTACAATATGCGATGAGTGTATTGAAATATTACGTTTATCGATGGAATTCAAGAATGGTGTCCTTGCCAGTGCAAAAAATATTAAACAAGACATCGAAGTTAAAATAGAAGAGACCACCAACGATGAAGACGATGAAAAAGAAGTAAATAAGGTTTTAAATGAAGAAGCAAATGAAAATATCAAAATCGAAGACAATGAAAAAGAATCAGTTAAAATAGAATACTCCGCAGAGAATGAAGAAATTGGTATATTTGAGGTTTTAGATGAAGAGACCGCAGAATATATCAAAGTTGAAGAGAGTGAAATGGAAATAGACGAAGCCTTCGTCGAATCTAAAATCAGTTTAACAAACACATGTGACATACATGAGAACAAATGCAATGTTTGCAATGAAACTTTTAAATACAAAAGGGAACTAGAAAGTCACATAATATCTCACAACGGCCATAAATGTCCAATATGTCAACAAATACTGTCTAATCAGAGAGAGTACTCGGAACACGTTAAGTCGAAGCACATTGTCGACGGCAAATATTGCTGTATCGTTTGCGATGCGACTTTTTTGGAAGTGAAAGAGGTCCAGTGTCACATAAAGACTCACTTGAGATACAGTTGTGAAGTGTGCCACAAGGAATATAAGAGTAAAAGTGATTTGCACAGTCACGAAAAGATGCACACAGATGAGAAAAAGTTTAAATGCACAATATGCAATAGCCTTTTCACACTTGGCACAAGTTTGAAGACTCACATGGAAACACACGAGGATAGAGCGCCGTACGAATGCCAAGAGTGCAAAAGGAAATTCACATGTAAGAACAATTTAGTGAGGCATTGTCAAAGCGTGCACACGGGTGTTAAAAAGTACAGTTGCCAATATTGCGATAAAAGTACTAAGACGAAAGATAGTTTGGTCATACACGAAAGGAGACATACGGGCGTAAAACCGTATGTCTGCGATGAATGCGATAGAGCGTTTTGTAGCAGAAGAGAGTTAGCGCGTCACAATACAGTGCATTTGACAAGTAAGCCTTACATTTGTACAGTGTGTAAGAAGGCATACAAAACCAAAGAAATTTTAAGAATACACACATTGAAGCATAATACTGAGATAAAACTGGGACACATGTTGAGGAATACTGGCATAAAATGCAGTGTCTGTAGCAAAGCTTTTGTACGTAAAGAAAATCTTACTAGACACATGATGAACCACAATGACGAAAGACCGTACAAGTGCGACATTTGTAAAAAGTCATTTAAGTTGAAGCACCATATAAGCCAACACATGTTGGTCGTACATTTGGGCCTTAAGCCAAGAATCACAGCAACTGTCGCAGAATGTGACATTTGCAAGGAGGCATTTAAACACAAACAAACTTTACACAGACACAAGTTGACTGTACATTTTAATATTAAGCCGAAGCGCACAGAAAGTGTCGCAGAATGCGACATTTGCAAGAAGACATTTAAACACAGACAGAGTTTAAGCAGACACAAGTCGATTGCACATTTGGGTTTTAAGCCGACGCGCACAGAGAGTGTCGCAGAATGCGACATATGCAAGAAGACTTTTAAACACAGACAGAGTTTAAGCAGGCACAAGTCGACTGCACATTTGGGTTTGAAGCAAACGCGTAAAGAAAGTGTCGCAGTAGACTGCGAcatatgtaagaagacatttaaacgcaaacagaatttagagaggcacatgttggttGTACATATGGGCTTTTTTGACAATACGTATTTGGCCAAAATATAA
Protein Sequence: MAETLNPSQFCRCCHKNGDFKCVFSDFIYENEVENYSQILYDTFGISFEPSEHYKMCTICDECIEILRLSMEFKNGVLASAKNIKQDIEVKIEETTNDEDDEKEVNKVLNEEANENIKIEDNEKESVKIEYSAENEEIGIFEVLDEETAEYIKVEESEMEIDEAFVESKISLTNTCDIHENKCNVCNETFKYKRELESHIISHNGHKCPICQQILSNQREYSEHVKSKHIVDGKYCCIVCDATFLEVKEVQCHIKTHLRYSCEVCHKEYKSKSDLHSHEKMHTDEKKFKCTICNSLFTLGTSLKTHMETHEDRAPYECQECKRKFTCKNNLVRHCQSVHTGVKKYSCQYCDKSTKTKDSLVIHERRHTGVKPYVCDECDRAFCSRRELARHNTVHLTSKPYICTVCKKAYKTKEILRIHTLKHNTEIKLGHMLRNTGIKCSVCSKAFVRKENLTRHMMNHNDERPYKCDICKKSFKLKHHISQHMLVVHLGLKPRITATVAECDICKEAFKHKQTLHRHKLTVHFNIKPKRTESVAECDICKKTFKHRQSLSRHKSIAHLGFKPTRTESVAECDICKKTFKHRQSLSRHKSTAHLGLKQTRKESVAVDCDICKKTFKRKQNLERHMLVVHMGFFDNTYLAKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -