Sfor008194.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000060.1:3064954-3079059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.7e-05 0.0033 18.0 7.9 1 23 193 215 193 215 0.98 2 13 2.2e-06 0.00013 22.5 0.2 2 23 228 249 228 249 0.98 3 13 5.4e-05 0.0031 18.1 2.1 2 23 258 279 258 279 0.98 4 13 4.2e-05 0.0024 18.5 2.0 1 23 285 307 285 307 0.98 5 13 1.8e-05 0.001 19.6 1.2 1 23 313 335 313 335 0.97 6 13 8e-05 0.0046 17.6 10.7 2 23 342 363 341 363 0.97 7 13 1.3e-05 0.00073 20.1 0.8 1 23 369 391 369 391 0.98 8 13 4.9e-06 0.00028 21.4 0.8 1 23 397 419 397 419 0.98 9 13 7.8e-05 0.0044 17.6 0.9 1 23 425 447 425 447 0.98 10 13 0.0023 0.13 13.0 1.2 1 23 453 475 453 475 0.95 11 13 1.4e-05 0.00079 20.0 1.2 1 23 481 503 481 503 0.97 12 13 2.2e-06 0.00013 22.5 2.7 1 23 509 531 509 531 0.98 13 13 0.00028 0.016 15.9 3.6 1 23 598 620 598 620 0.99
Sequence Information
- Coding Sequence
- ATGGCTGTCAATAAAGTGCATGTGCCAGATTATAATTTCGAGAAAGTTTGCCGAGCATGTTTACAAGTGAAAAAAGATATGAGGCCATTGTTTCAACAATTGGTAGCAACTATGTTTATGGACATATCAAAAGTGCAGGTGGCTGTTGGCGATGGGCTTCCTGCCCAGTTGTGCCTACAATGTGTGCATCAACTTTGCCGTTGTCATGCTTTCAAAGAGTTGATCGAAAGAAATGATTTCACATTAAGGGAGCAAGTAAAACGAATGGCCGAAGAAGAGTTTAAGAAAAAGGAAAAAGAAAACGCGTTGACAACCCTGAACTGTGCAGATCCGTCTTCATTCATGCCATACATAGACGTTCCAATCGGTAATGGCACCGCTGAGATATATGATGGATTCTTCACTACAAACACAAATCAAACACAGGAAATTGCTTCTAAACCCGATTTTGAAGAAAAGGTCCAATCAAATAATCCCTCGGAATCAAAACCGGAAGACGAAGCCCTAAATTCGGATGAGGAGAACTATCTTCAACTGGTGGTGTTCCAAGCGACTTCATCGGTGGCACCCGGGAGACATGTATGCAATCTGTGCCATAAGGAGTTTAAGCATTCGCGATGGCTCAAACAGCATATGAGATCGCATTCGAACTGGATCAAAGCTAATTGCAAAAAGCCTCCGGTATGTCCGATTTGTTCGAGGACTTTCAAGGGTCCGGGCATGTTGAAAATGCACATGAGGACTCACGAACAACGCCCACCCAAACAGCCAACGTGCTCAGTGTGCCAGCGCACTTTCCCAACAAAAACGCTGCTCTATCGCCATAGACAAACGCACTTTGAGCAGAAAACGCATCAGTGCACGGTGTGCGACAAGAGGTTCTATAGTGGCTACGCGTTGAGATCTCACATGGCGAGACACAGAGGCGAGAGGCCATACATTTGCACCATGTGTTCAAAGAGTTTCTACAATCCTACCGATTTAAAGGTGCATTTCCGTCTGCATACGGGTGAAAAGCCACTCAAGTGTTCAGAATGTCACAAAACCTTCCGTCGACACTCGACCCTCTGCCAACATATGAAGAAACACCGTGGCATCCGCAACCACGTTTGCACCATCTGCAATAAAGGCTTCTACGAAGTCTCCAAGCTGAATGCCCACATGAGAGTCCATACAGGGGAGCGACCTTTCGAGTGCGACTCGTGCGACCGCAAATTCGCCCAACAATCCGCACTGATCTACCATCGACGCACGCACACCGGTGAGAAACCGTACTCGTGCAAGGTGTGCTCGGCGAGGTTCACCACGTCGTCGGCTCGCAACAACCACATGATCACTCACACGGGCCACAAGAAGTTCCTGTGCGGTGTTTGCGCCAAAGGATGCACTTCTCGCACCGAACTGAGAGTGCACATGAGTCGCCACACGGGCGAGAAGCTTTTCGCCTGCGAAACATGCGGCCAAAGGTTCAGTTCGGCGTCGTATCTCGCAGTGCACAGACGTCATCACACAGGCGAAAGGAACTATCACTGCAATATCTGCGGCAAAGCGTACATAGAATCGAGTTCATACAAGAAACACATGAAAACGCACGAGAAGAAATCCGAAATGGAGTCAAATTCTGAGAGTTCGGAGACTCAGGTCGAGGGTGGAGCCAAGTCTGATAGCGAAAGTCACACTGAGATTCAAGTGACGACAAAAGAGGTGGTGGACGGTCAGGTTCAGGAGGTCGAAGGTGAGGAAACGGTGGTGACTCAGGGCCAAGAGACGACCATGGCGCAGCAAAAACGGTACAAGTGCGGACTTTGCGTCAAGACCTACATGTATCTGCACAGCTTAAAGAAACACATGATGACTCATGTTCAGCAAGTGCAACAGGCACAACAACAGCAACAGCAGCAGCAACAAGTCCAGCAACAGCAGCAGCAACAAGTCCAGCAGCAGCAGCAACAGCAACAAGTGCAACAACAACAGCATCCGCTACAACAGCAGGCGGTGCTGCAAGTGGGCGGAGTCCAGCAACTGGCTGTGCCAATACACGCTCAACAATTGCAACAGGGACTCGCCGTTTCCGGAGTACAGGGTGGTTCATATCCGGTAATATCTTCGGTGCAATCACTGCAACTGCAACAGACTCAGCATCAAGTGAACACTCAACAGCAACCTCAGCAGCTTCAGGTGCAGACTATACAGATACATCCGCAACACCAGCCGATACAAATACATACCGTCGGAGTACAACAACAACAATTGCACGTTGCCACATCTACTTGTCAAACAATGCTGCCAGCAAATATTCTCCAGTTGCAACCGGCAACGGTGGCCGTGTCGGGACTAACTCAACAGGAACTCGGTGGCGTCGCTCATCGCATCATCCTGCAGCCGCAACATCCCCATCCGAACTCTCATCAGCATCCCGTTTACACCATACAACACCACTAG
- Protein Sequence
- MAVNKVHVPDYNFEKVCRACLQVKKDMRPLFQQLVATMFMDISKVQVAVGDGLPAQLCLQCVHQLCRCHAFKELIERNDFTLREQVKRMAEEEFKKKEKENALTTLNCADPSSFMPYIDVPIGNGTAEIYDGFFTTNTNQTQEIASKPDFEEKVQSNNPSESKPEDEALNSDEENYLQLVVFQATSSVAPGRHVCNLCHKEFKHSRWLKQHMRSHSNWIKANCKKPPVCPICSRTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFPTKTLLYRHRQTHFEQKTHQCTVCDKRFYSGYALRSHMARHRGERPYICTMCSKSFYNPTDLKVHFRLHTGEKPLKCSECHKTFRRHSTLCQHMKKHRGIRNHVCTICNKGFYEVSKLNAHMRVHTGERPFECDSCDRKFAQQSALIYHRRTHTGEKPYSCKVCSARFTTSSARNNHMITHTGHKKFLCGVCAKGCTSRTELRVHMSRHTGEKLFACETCGQRFSSASYLAVHRRHHTGERNYHCNICGKAYIESSSYKKHMKTHEKKSEMESNSESSETQVEGGAKSDSESHTEIQVTTKEVVDGQVQEVEGEETVVTQGQETTMAQQKRYKCGLCVKTYMYLHSLKKHMMTHVQQVQQAQQQQQQQQQVQQQQQQQVQQQQQQQQVQQQQHPLQQQAVLQVGGVQQLAVPIHAQQLQQGLAVSGVQGGSYPVISSVQSLQLQQTQHQVNTQQQPQQLQVQTIQIHPQHQPIQIHTVGVQQQQLHVATSTCQTMLPANILQLQPATVAVSGLTQQELGGVAHRIILQPQHPHPNSHQHPVYTIQHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386037;
- 90% Identity
- iTF_01386037;
- 80% Identity
- -