Sfor012243.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:139456-141381[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00039 0.022 15.4 1.3 1 23 99 121 99 121 0.97 2 15 5.3e-05 0.003 18.1 1.1 1 23 127 149 127 149 0.99 3 15 4.4e-06 0.00025 21.6 1.4 1 23 182 204 182 204 0.96 4 15 5.6 3.2e+02 2.3 0.2 12 23 225 237 224 237 0.89 5 15 0.00012 0.0068 17.0 2.0 2 23 248 270 247 270 0.94 6 15 8.3e-06 0.00047 20.7 2.2 2 23 277 299 276 299 0.97 7 15 5.8e-07 3.3e-05 24.3 1.3 1 23 307 330 307 330 0.95 8 15 3.8e-05 0.0022 18.6 1.6 2 23 341 363 340 363 0.93 9 15 1.7e-06 9.5e-05 22.9 0.5 2 23 369 391 368 391 0.96 10 15 0.00092 0.052 14.3 1.2 2 23 398 420 397 420 0.91 11 15 0.0025 0.14 12.9 0.9 2 23 427 449 426 449 0.90 12 15 6.1e-05 0.0035 18.0 4.8 3 23 457 478 455 478 0.93 13 15 1.6e-07 9e-06 26.1 0.7 2 23 485 507 484 507 0.94 14 15 2e-05 0.0011 19.5 1.5 1 23 512 535 512 535 0.95 15 15 1.5e-05 0.00082 19.9 1.7 1 23 540 563 540 563 0.97
Sequence Information
- Coding Sequence
- ATGGCAGTCGACGTCAAAGTTGAAAGGGAAGAGACTCCCACTCTCAACGATGAAGATCACTCAGACATAAATGCGGTTTTAGATGAAGTATCCAATCAAGATAGGAGAATTGAAGAGAGCCGAAACAAATCAGATGAAACCTTCAGTGAATCTGAAATATTCACGAATCAGAGAGAGCACTCAGAACACATAAAGTCGAAGCACGTAATCGACGCCAAATATTGGTGTATCGCTTGCGATGCGACTTTTTTAGAAGTGAACAACTTAAAATGTCACATCAAAACGCACTTTAAACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAAGCATGAAATGGTGCACAAGGAAAAGAGAAAGTTTAAGTGCTCAATATGTAATGATGGGTTTACACTGAGCAGAAGTTTGAAAGCTCACATGAAAACACACAAGGATGGAAAACCGCACGAATCAAAAATAGTCAAAAATAGCTTATTGAGGCATCGTCAAAACATGCACACGGGTGTAAATAAGGACAGTTGCCAGTATCAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAAGATGCTTTGGTAAGTCATAATAAAGAGCATGAGAAACGTGAGCCTTATAATTGTAACCTGCGTGGAAATAGATTTAAAGGAAGAGAAAATTCTAAGGAAAGTCTACGCAGTCATATGTCGGTTGTACATTTGGGCATTAAGCCAACGCCCACTGTCACTAAGTGCAACATTTGCATGAAGACATTTAAAAACAAACAGAGTTTAAGCAAGCACATGTCGGCTTTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAAAAGACATTTAATACCAAGCGTTATATACGCAAGCACATGTTGACTGTACATTTGGGCTCTGAGTTTACGCCCTTTGAATGTGACATTTGCAAAAAGAAATTTAAATCCAAGTCTAATATGCGCCAGCACATGTTGGCTGTGCATTTAGGCTTTAAGCGAACGCCCACTGTCACTGAGTGCAAAATTTGCAAGAAGACATTTAAATACAAACAGAATGTAAGCAAGCACATGTCGGCTGTACATTTGGGTTTTAAGCTTAAATGCGATATTTGCAAGAAGACATTTATATACAAGGGAAGTCTACGCCAGCACATGTTGATTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAATAAAACATTTAAATATAAACAGAGTTTAAGCTTTCATATGTCGGCTGTACATTTGAACCTTTCACCCATTCAGTGCGAAATTTGCAGGAAGACATTTAAATATAAACAGAGTTTAAGCTTTCATATGTCGGCTGTACATTTGAACCTTCCACCCACTCATTGCGAAATTTGCAAGAAGACATTTAAACATAAACAGAGTTTGAGCAGGCACATGTCGGCTGTACATTCGGACCGTCCACGCACTCAGTGCGACATTTGCAACAAAACATTTAAATCCAAGGATAATTTACTCAAGCACATGTTGGCTGTACATTTGGGCTTTAAGTTTAAATGCGACATATGCAAGAAGACATTTAAATCCAAGAATTATATACGCATGCACATGTTGGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATATGCAACAAGACATTTATATACGAACGGAGTTTAAGCAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCAAATACGCACTAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAVDVKVEREETPTLNDEDHSDINAVLDEVSNQDRRIEESRNKSDETFSESEIFTNQREHSEHIKSKHVIDAKYWCIACDATFLEVNNLKCHIKTHFKHRCEVCNRDYQSKGELRKHEMVHKEKRKFKCSICNDGFTLSRSLKAHMKTHKDGKPHESKIVKNSLLRHRQNMHTGVNKDSCQYQCEKCNKSFRSKDALVSHNKEHEKREPYNCNLRGNRFKGRENSKESLRSHMSVVHLGIKPTPTVTKCNICMKTFKNKQSLSKHMSALHSDLPPTQCDICKKTFNTKRYIRKHMLTVHLGSEFTPFECDICKKKFKSKSNMRQHMLAVHLGFKRTPTVTECKICKKTFKYKQNVSKHMSAVHLGFKLKCDICKKTFIYKGSLRQHMLIVHSDLPPTQCDICNKTFKYKQSLSFHMSAVHLNLSPIQCEICRKTFKYKQSLSFHMSAVHLNLPPTHCEICKKTFKHKQSLSRHMSAVHSDRPRTQCDICNKTFKSKDNLLKHMLAVHLGFKFKCDICKKTFKSKNYIRMHMLAVHLGFKFKCDICNKTFIYERSLSRHKSTVHLGLKQIRTKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -