Sfor020734.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000312.1:16881-23145[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-08 1.6e-06 28.5 1.7 1 23 305 327 305 327 0.99 2 13 0.0005 0.028 15.1 5.4 1 23 357 380 357 380 0.89 3 13 0.0064 0.36 11.6 0.7 1 23 384 406 384 406 0.98 4 13 0.00012 0.0069 17.0 3.2 1 23 412 434 412 434 0.95 5 13 2.5e-07 1.4e-05 25.5 2.3 1 23 440 462 440 462 0.99 6 13 6.1e-07 3.5e-05 24.2 0.8 1 23 468 490 468 490 0.98 7 13 4.6e-07 2.6e-05 24.6 1.0 1 23 496 518 496 518 0.99 8 13 0.00014 0.0077 16.9 2.7 1 23 524 547 524 547 0.94 9 13 9.7e-06 0.00055 20.5 0.6 3 23 554 575 552 575 0.93 10 13 5.1e-06 0.00029 21.3 0.5 3 23 582 603 580 603 0.96 11 13 8.9e-06 0.0005 20.6 1.7 1 23 608 631 608 631 0.94 12 13 4.6e-06 0.00026 21.5 0.9 1 23 636 659 636 659 0.94 13 13 3e-05 0.0017 18.9 2.2 1 23 664 687 664 687 0.93
Sequence Information
- Coding Sequence
- ATGGCTGAAACATTGAACCCAATACCTTTTTGTAGATGTTGTCACAAGAACGGTGATTTCAAGTGTTTATTTTCCGACTTCATTTACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGACACATTTGAAATCTTACTTGTACCCTCCATAGATGACAAAATCTATACAATATGCGACGAGTGTATTGAAAAATTACGTATCTCATCAGAATTCAAGAATTGTGTCCTCGCCTGTAAAAAAAATGCTTGTTGGCGGGGGCACTGCCGTGTTCGGTTTGGCGGGGGCACTGCAGTGACCCCAGATATGAAACAAGAGACCTCCGAAGATGAAGACAATGACACGGGTATAATAAATAAGGTTTCAGACGAAGAATTCAACCAAGAGGTCAAAGTTGAAGAGAGCGAAAAGAATTCTGATGAAGCTTGGAAAGAGATGGTCAACAATGAAGAATTAGGAATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAATAAAGACTCAATTATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAAGGTTTTAGATGAAGAGTCCAATGAAGATGTCAGAAATGAAGACTCAATTATAAATAACTTTTTAGATGAAGAATCCAATGAAGAGAGTGAAATGAAATCAGATGAAAACTTTAGTGATGCTGGTGTCAGTTTAAGAAAAGCAAGCGACATACATGAGTATAAATGCGACATTTGTAATAAATCTTTTAAACGCAAAGGGACCCTAGAAAATCACGTCAGAACTCACGACGGCTCTAAATGTCCAGAAATATTGTCGAATAAGAGAGAGAACGCGAAACACCATCAGTTGAAGGTTCGCATTGACACACAGACACATGAGTGCCAAGAGTGCGGTCGAAAATTCACAAGAAAAAAATACTTACTAAGGCATTGTCGAGAGGTACACATAAAAAAGTACAGTTGCCGGTATTGCAATAAAAAAATTGCGTCAAAACCGAGATTGGTTATACATGAAAGGACACACACGGGTCAAAAACCGTATGTCTGCGAAAAATGCGATAAATCGTTTCACAGTAAAGACAGTTTACTGCATCATAATGCAGTGCATTTGGAATATAAGTCTTTCACTTGTAATGTGTGTGATAAAGCATTCAAAAAGAAAAATACTTTAAACAAACACATGTTGACGCATACTGGGATAAAACCTTTCCAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATTATCTTAAGGGTCACATGATGGTTCATACGAGCGAAAGACCTTACAAATGCAGTGTCTGTAGCAAGAGTTTTGCACGTAAAGATTATCTTAAGGGTCACATGATGGTTCATACGAGCGAAAGACCTTACAAATGCAGCACTTGCAAAAAGACATTTAAATACATACAGACTTTAAGGACGCACATGTCGGATGTACATTTGGGCTTTAAGCTCGACTGCGACATTTGCAAAAAGACATTTAAACGCAAAGATACTTTAAGGGGGCACATGTCGGCTGTACATTTGGGCTTTAAGCTCGACTGCGACATTTGCAAAAAGACATTTAAATACAAAGAGGGTTTAAGGGAGCACATGTCGACTGCACATTTAAGCTTTAAGTTTGACTGCGACATTTGCAAAAAGACATTTAAATACAAGAGGACTTTAAGACAACACATGTCGGCTGTACATTTGGGCTATAAGTTTGACTGCGACATTTGCAAAAAGACATTTAAATACAAAGATACTTTAAGAGAACACATGTCGGCTGTACATTTGGGCTTTAAGTTTGACTGCGACAAATGCAAAAAGACATTTAAATACAAGAGGACTTTAAGAGAACACATGTCGGCTGTACATTTGGGCTTTAAGCCAACTTATGACATTATTGGACCTTCGGATCCGGATATAAATGGACCTTTGGAGCCGTACATAAAATGGTCCATCAGAGTCGAACATAATCGGACCTTCTCAACTCGACTTCAACCGGACTTCAAGATCTTACCATCCGAGGCGATCTCCAGGAACCGGACCACCGATGAGTCGATCTACAGAGAAGAAGTAGTCTTCTTCTCTGTAGATTGGTACGGCCAGCCAACTAGTTCTCCAAGACCTCCTATGAGCTTCAATTAA
- Protein Sequence
- MAETLNPIPFCRCCHKNGDFKCLFSDFIYENEIENYSQMLYDTFEILLVPSIDDKIYTICDECIEKLRISSEFKNCVLACKKNACWRGHCRVRFGGGTAVTPDMKQETSEDEDNDTGIINKVSDEEFNQEVKVEESEKNSDEAWKEMVNNEELGINKVLDEESNEDVRNKDSIINKVLDEESNEDVRNEDSIINKVLDEESNEDVRNEDSIINKVLDEESNEDVRNEDSIINKVLDEESNEDVRNEDSIINKVLDEESNEDVRNEDSIINNFLDEESNEESEMKSDENFSDAGVSLRKASDIHEYKCDICNKSFKRKGTLENHVRTHDGSKCPEILSNKRENAKHHQLKVRIDTQTHECQECGRKFTRKKYLLRHCREVHIKKYSCRYCNKKIASKPRLVIHERTHTGQKPYVCEKCDKSFHSKDSLLHHNAVHLEYKSFTCNVCDKAFKKKNTLNKHMLTHTGIKPFQCSVCSKSFARKDYLKGHMMVHTSERPYKCSVCSKSFARKDYLKGHMMVHTSERPYKCSTCKKTFKYIQTLRTHMSDVHLGFKLDCDICKKTFKRKDTLRGHMSAVHLGFKLDCDICKKTFKYKEGLREHMSTAHLSFKFDCDICKKTFKYKRTLRQHMSAVHLGYKFDCDICKKTFKYKDTLREHMSAVHLGFKFDCDKCKKTFKYKRTLREHMSAVHLGFKPTYDIIGPSDPDINGPLEPYIKWSIRVEHNRTFSTRLQPDFKILPSEAISRNRTTDESIYREEVVFFSVDWYGQPTSSPRPPMSFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -