Sfor012248.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000091.1:173010-176325[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.6e-06 0.00055 20.5 5.2 2 23 167 188 166 188 0.98 2 17 0.00095 0.054 14.2 1.6 1 23 191 213 191 213 0.97 3 17 0.0056 0.32 11.8 0.3 5 23 223 241 222 241 0.96 4 17 7.4e-05 0.0042 17.7 3.4 1 23 247 270 247 270 0.95 5 17 1.3e-06 7.2e-05 23.2 2.7 1 23 280 302 280 302 0.98 6 17 0.0014 0.081 13.6 1.5 5 23 338 357 337 357 0.92 7 17 0.0072 0.41 11.4 0.6 2 23 364 386 363 386 0.92 8 17 8.3e-06 0.00047 20.7 0.6 1 23 391 414 391 414 0.95 9 17 5.2e-06 0.0003 21.3 1.3 1 23 419 442 419 442 0.93 10 17 0.00012 0.007 17.0 0.7 2 23 449 471 448 471 0.94 11 17 1.8e-05 0.001 19.6 2.5 1 23 479 502 479 502 0.96 12 17 4.3e-05 0.0024 18.4 0.7 2 23 513 535 512 535 0.94 13 17 8e-06 0.00045 20.7 2.5 2 23 544 566 543 566 0.93 14 17 1.5e-05 0.00084 19.9 1.3 2 23 572 594 571 594 0.92 15 17 2.7e-05 0.0016 19.1 0.9 2 23 601 623 600 623 0.94 16 17 1.8e-05 0.001 19.6 2.9 2 23 630 652 629 652 0.94 17 17 3.3e-06 0.00019 21.9 0.7 2 23 659 681 658 681 0.94
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAACCAAACACCGTTATGCAGATGTTGTCACAAGAATGGCGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCCCAGATGTTGCACGCTACATTCGGAATCTTATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCAACGAGTGTATTGAAAAACTACGTATCTCAATGGATTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCATTAATTGAAAACGATGTCTCAATTAAAATAGAGAAAATGTGGAGTTATGCTTGCAGCGATAAAGAAGGACCGTTGATTAAAGTTGAGAGGGAAGCGACTCCTACTCCCAACGATGAAGACAATCACTCAGATATAAATGTGGTTTTAGATAAAGTATCCAATCGAGATGTCAAAATTGAAATGAGTGGAAACAAATTAGATGAAAACTTCAGTGAATCTGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAAAACTTTTAGATTCAAAGAGTGCCTAGAAAGTCACATGAAGACGCACTTTAAACATCGCTGTGAATTATGCAATAGGGATTATCAGAGCAAAGGTGAATTGCGTAAGCACGAAATGGTGCATAAGGATGAGAGAAAGTTTGAGAGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCATATGAAAACACACAAGGACGGAACACCGCACGAGTGCCAAGAGTGTGGCCGGAAATTCAAAGTCAAAAAAAGCTTATTGAGGCATCGTCAAAATATGCACACAGGTGTAAACAAGTACAGTTGCCAGTATCAGTGCAAAAAATGCAATAAATCGTTTAGAAGCAAAGATGCTTTGTTAAGTCATAAAAAAGTGCATGAGAAAGATGAGCCTTACAATTGTGACCTGCGTGAAAATAGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGGGTAACATTTGCAAGAAGACATTTAAACACAAACAGAGTTTAAGCAGTCACATGTCGGCTGTACATTCGGACCTTCCACCCACACAGTGCGACATTTGCAAAAAGATATTTAAATCCAAGAAGATTATACGCAATCACATGCTGGCCGTACATTTAGGCCTTAAGTTTAAGTGCGACATATGCAAGAAGATATTTAAACGCAAACAGGGTTTAAGCATTCACATGTCTGCTGTACATTTGGGCTTTAAGTTTAAGTGCGACATATGCAAGAAGACATTTAAATACAAGGAAACTTTACGCCAGCACGTGTTGGCTGTACATTCGGACATTCCACCCACTCAATGCTACATTTGCAAAAAGACATATAAATACAAGCCAAGTCTTCGCGACCACATGTTGGCTGTACATTTGTGCACTGAGTTAACGTCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATACGAACGGAGTTTAAAAAGGCATAAGTCGTCTGTACATTTGGGCTTTAAGCCAACGCCCACTGCAACCGAGTGCGATATTTGCAGGAAGACATTTAAATCCAAGGACACTATACGCCAGCACATGATGGCTGTACATTTGGGCTTTAAGCCAACGTCCACTGAGTGCGAAATTTGCAAGAAGACATTTAAACACAAGCAAAGTCTACGCAATCACATGTCGGCTGTACATTTGGGCTTTAAGCTTAAGTGCAAAATTTGCAAGAAGACATTTAAATACAAGGAAACTTTACGCCAGCACGTGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATATAAAAATAAACAGGGTTTAAGCAAGCACATGTCGGCTGCACATTCGGACCTTCCACCCACTCAGTGCGACTTTTGCAATAAGACATTTAAAAATAAACACGGTTTAAGCAGGCACATGTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGAAATTTGCAAAAAGACATTTAATTCCAAGCCTTATTTACGCAAGCACATGTTGGCTGCACATTTGGGCATTAAACCGACGACCTTTGCGGCATTTGCAAAACGACATTTAAATAAAAAAAGAATTTAA
- Protein Sequence
- MAATLNQTPLCRCCHKNGVFKSLFSDYIYNENEVENYSQMLHATFGILFEPSERDKIYTICNECIEKLRISMDLKIACGKIIKQEPLIENDVSIKIEKMWSYACSDKEGPLIKVEREATPTPNDEDNHSDINVVLDKVSNRDVKIEMSGNKLDENFSESENDRHENKCNICNKTFRFKECLESHMKTHFKHRCELCNRDYQSKGELRKHEMVHKDERKFESSICNNGFTLSRSLKAHMKTHKDGTPHECQECGRKFKVKKSLLRHRQNMHTGVNKYSCQYQCKKCNKSFRSKDALLSHKKVHEKDEPYNCDLRENRFKRRENFNRQMLMHAEIKEGNICKKTFKHKQSLSSHMSAVHSDLPPTQCDICKKIFKSKKIIRNHMLAVHLGLKFKCDICKKIFKRKQGLSIHMSAVHLGFKFKCDICKKTFKYKETLRQHVLAVHSDIPPTQCYICKKTYKYKPSLRDHMLAVHLCTELTSFECDICKKTFKYERSLKRHKSSVHLGFKPTPTATECDICRKTFKSKDTIRQHMMAVHLGFKPTSTECEICKKTFKHKQSLRNHMSAVHLGFKLKCKICKKTFKYKETLRQHVLAVHSDLPPTQCDICKKTYKNKQGLSKHMSAAHSDLPPTQCDFCNKTFKNKHGLSRHMSAVHSDLPPTQCEICKKTFNSKPYLRKHMLAAHLGIKPTTFAAFAKRHLNKKRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -