Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000154.1:105868-121134[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00032 0.018 15.7 2.6 1 23 431 453 431 453 0.97

2 20 0.018 1 10.2 2.0 1 21 459 479 459 481 0.94

3 20 0.00013 0.0076 16.9 2.2 1 23 500 522 500 522 0.98

4 20 3.3e-05 0.0019 18.8 4.4 1 23 528 550 528 550 0.99

5 20 4.1e-05 0.0023 18.5 5.3 1 23 556 578 556 578 0.97

6 20 7.9e-06 0.00045 20.8 8.3 1 23 584 606 584 606 0.97

7 20 1.8e-06 0.0001 22.8 2.5 1 23 612 634 612 634 0.97

8 20 0.00011 0.0064 17.1 6.7 1 23 640 662 640 662 0.97

9 20 0.00011 0.0064 17.1 6.5 1 23 668 690 668 690 0.97

10 20 5.4e-07 3.1e-05 24.4 1.9 1 23 696 718 696 718 0.98

11 20 5.5e-05 0.0031 18.1 7.9 1 23 724 746 724 746 0.98

12 20 8.8e-06 0.0005 20.6 6.6 1 23 752 774 752 774 0.98

13 20 7.1e-07 4.1e-05 24.0 5.5 1 23 780 802 780 802 0.98

14 20 1.7e-05 0.00099 19.7 7.1 1 23 808 830 808 830 0.97

15 20 6.5e-05 0.0037 17.9 6.2 1 23 836 858 836 858 0.98

16 20 3.4e-06 0.00019 21.9 6.0 1 23 864 886 864 886 0.98

17 20 0.00053 0.03 15.0 8.7 1 23 892 914 892 914 0.97

18 20 1.7e-06 9.9e-05 22.8 6.1 1 23 920 942 920 942 0.98

19 20 0.00044 0.025 15.2 0.1 1 23 949 971 949 971 0.97

20 20 0.0016 0.089 13.5 3.1 1 23 981 1003 981 1003 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00032	0.018	15.7	2.6	1	23	431	453	431	453	0.97
2	20	0.018	1	10.2	2.0	1	21	459	479	459	481	0.94
3	20	0.00013	0.0076	16.9	2.2	1	23	500	522	500	522	0.98
4	20	3.3e-05	0.0019	18.8	4.4	1	23	528	550	528	550	0.99
5	20	4.1e-05	0.0023	18.5	5.3	1	23	556	578	556	578	0.97
6	20	7.9e-06	0.00045	20.8	8.3	1	23	584	606	584	606	0.97
7	20	1.8e-06	0.0001	22.8	2.5	1	23	612	634	612	634	0.97
8	20	0.00011	0.0064	17.1	6.7	1	23	640	662	640	662	0.97
9	20	0.00011	0.0064	17.1	6.5	1	23	668	690	668	690	0.97
10	20	5.4e-07	3.1e-05	24.4	1.9	1	23	696	718	696	718	0.98
11	20	5.5e-05	0.0031	18.1	7.9	1	23	724	746	724	746	0.98
12	20	8.8e-06	0.0005	20.6	6.6	1	23	752	774	752	774	0.98
13	20	7.1e-07	4.1e-05	24.0	5.5	1	23	780	802	780	802	0.98
14	20	1.7e-05	0.00099	19.7	7.1	1	23	808	830	808	830	0.97
15	20	6.5e-05	0.0037	17.9	6.2	1	23	836	858	836	858	0.98
16	20	3.4e-06	0.00019	21.9	6.0	1	23	864	886	864	886	0.98
17	20	0.00053	0.03	15.0	8.7	1	23	892	914	892	914	0.97
18	20	1.7e-06	9.9e-05	22.8	6.1	1	23	920	942	920	942	0.98
19	20	0.00044	0.025	15.2	0.1	1	23	949	971	949	971	0.97
20	20	0.0016	0.089	13.5	3.1	1	23	981	1003	981	1003	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAACACCACAGTATAAATACGGGTGGTGGCCAACCGCCTGGAAATTCTGAGAATCACAGTCAGAGAGTTCAGGTGGCCCAACAGCAGCAGCCAACGAATAGCTTGACACCGACAACATCTGCTACTGACCTACGAGTCAACTCAGCTGCCGTAAATGTCGCTTTGTCTAGCGTCGCTAAATATTGGGTGTTTACTAATTTATTTCCTGGTCCTATACCACAAGTATCCGTGTACGGGTTGCCCACTGGAACAAGAATTGAAAATGGAAAGCCTGTTCAGGATCTCGGACAGCATGCAAGTATATTAAATGGTGACCCAAATATCATACTTGGACATCATGCAGGACAATCACAAGTTACCGTGTCGGCCGCAGGTCAACAACAGATTCCCGTTTCGCAGATTATTGCTACTCAATCTGGACAAACACATGAAGCATTGGTGGCGCACAGTCAAGCTCAAGAGCTTGTCAACGCGCAGCAGGGGAACGGAACTCAGGCTCAGGTCTCCGCAGGCCAGAATCTCCACCAGCAGGTACCCAATAATCGGGTCGAATTTGTTCAACACCATAACATTGATATGGTAAATCATGTGGCACACCATTCCCAGCAACACATAATGCAACAACAACTAATGACGTCATCACGTCCCGACCACGCCAACCAACAGATCCAATTAACGGTCAGTGAGGACGGAATTGTCACTGTGGTTGAACCTGGTGGTAGTAACAAACTGGTGGACAAAGAGGAACTTCATGAAGCCATAAAGATGCCGTCCGATCATACCCTTACCGTTCACCAGTTGCAGCAAATTGTAGGACAACAGGTGTTAGACAGTGTGGTACGGATTGAACAGGCCACAGGCGAACCGGCCAACATTCTGGTCACTCACAACCCGGACGGCACAACTTCCATAGAAGCCAGCGCCAGCGATCCACTCATTGTGAAGGACGAGAAAGCGTCCAACAAAATCGAGACGGCACAGTTTGCTATACCAGCGGAAATTAAGGACATCAAAGGCATTGATTTGAAGAGTGTGGGAACAATGGGTATGGAGGGAGCCGTAGTGAAGATATCTGCGGGTGCTTCTGAACACGATTTTCACCAAATGTACAAAGTGAATGTGGAGGACTTGTCTCAGTTGCTAGCGTACCACGAAGTGTTTGGAAAACTTAACTCCGAGGGACAACAGCAGGCCAAGGTGATGGAAAGCATTGAGGTGGAAGTGCCTCCGCCTTCCACAAGTGCGGCGATATCGGAAACAGAGTCCTCCTCGCCGGGACACCACTCGTGCGACCTCTGCGGGAAAATATTCCAGTTCAGATATCAACTCATTGTGCATAGGCGTTACCATGGAGAACGCAAACCGTTCACATGCCAAGTGTGCGGCTCGGCGTTCGCTAATCATGTCGAACTATCCAGACATGCGAAATGTCATCTTGCGGGAGATGCAGCCGAGCGTCACGCCAAAAGGGTTTCCCAGGATAAGCCGTACGTTTGCGCTACTTGCCTCAAAACTTTCGCAAGGAAGGAGCATCTCGACAACCACACTCGGAGTCACACAGGGGAGACACCGTACAGATGCCAGTACTGTGCGAAATCGTTCACCCGAAAAGAGCACATGGTGAACCACGTACGGAAACACACGGGCGAAACGCCCCATCGCTGCGACATATGCAAGAAGTCTTTCACGCGCAAGGAGCACTTCATGAACCATGTCATGTGGCACACGGGTGAAACGCCGCACCATTGCCAAATATGTGGCAAGAAGTACACTAGGAAGGAGCATTTAACGAACCATATGCGCTCGCACACGAACGATACGCCTTTCCGATGTGCGATGTGCGGCAAGTCATTCACCCGAAAGGAACATTACACCAACCACATACTGTGGCACACCGGCGAGACGCCCCACCGCTGCGATTTCTGCTCGAAGACGTTCACCCGTAAGGAGCACCTGCTGAACCACGTGCGGCAGCACACGGGTGAATCGCCCCACCGCTGCAACTTCTGCTCCAAGTCCTTCACGCGCCGCGAACACCTCGTCAACCACGTGCGTCAACACACGGGTGAAACGCCCTTCCAATGTGGCTACTGTCCTAAGGCATTCACCAGGAAGGACCACTTGGTGAATCATGTGCGTCAGCACACCGGCGAGTCACCGCACAAGTGCTCATTCTGCACGAAATCTTTCACGCGCAAAGAGCACTTAACGAACCACGTGCGACAGCACACGGGCGAATCACCCCACCGGTGTACGTACTGTGCCAAATCCTTCACCAGGAAGGAGCATTTGACCAATCACATCAGACAACACACGGGCGAAACTCCGCACAAGTGCACATACTGTCCGAAGGCGTTCTCCCGTAAGGAGCATCTCACCAACCATATCCGGCAGCACACCGGCGACTCTCCGCACGTGTGCTCCTACTGTCAGAAGTGCTTCTCGCGCAAGGAGCACCTCGTCATACACATAAGGCAACACACAGGCGAGACGCCATACAAATGCACGTTTTGTGCTAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACATCCACCTTCACACGGGAGAGACGCCCCACAAATGCCCCTTCTGCACCAAGACCTTCTCCCGGAAGGAGCATCTCACCAACCACGTTAGAATCCACACAGGGGAATCTCCGCATCGGTGCGAGTTCTGTCAGAAGACCTTCACTCGAAAAGAGCATCTCACGAACCATTTCAAGCAGCACACTGGCAACACACCACACACTTGCAAAGTTTGCTCAAAGTCTTTCACTCGCAAGGAGCATCTCGCTACCCATATGAGGTCTCATAGTTGCGGGGAGCGTCCTTACATTTGTGGTGAATGTGGGAAATCATTCCCACTTAAAGGAAATTTATTGTTCCATGTGCGATCGCACAAGAACACTAATGCAGAGAGCAAATTATTCCGGTGTGATGTCTGCAGTAAAGAATTCTTATCGAAAACTCACCTGGCGAGCCACCGGCGCATGCACGAATCAGGTGAGGCGTGCGCCGAACATCCGGAGGAATCGCACTGTGATAATAATTGTGACAAGGAGGAAACCGACACCAAGCAGGAGTTAAGGACTGTGGTCACGGAAAACAGCTCTGTTCCCGTTGAAAGCAATGACGTGACGCAAAATCCTCAAAACAATACAAACACTGTGATGCAAATTACCAGCCAGGCGGTTCGATCGGCGCCTCCAGCTGCGGGTACTGTGGGCAGTGTGGGCGCTGTGCCAGGCGCATTCGCCCACGCGACCGCACCACAGCATCACACGGGCACCCATCACCCGGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHSINTGGGQPPGNSENHSQRVQVAQQQQPTNSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQHASILNGDPNIILGHHAGQSQVTVSAAGQQQIPVSQIIATQSGQTHEALVAHSQAQELVNAQQGNGTQAQVSAGQNLHQQVPNNRVEFVQHHNIDMVNHVAHHSQQHIMQQQLMTSSRPDHANQQIQLTVSEDGIVTVVEPGGSNKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASASDPLIVKDEKASNKIETAQFAIPAEIKDIKGIDLKSVGTMGMEGAVVKISAGASEHDFHQMYKVNVEDLSQLLAYHEVFGKLNSEGQQQAKVMESIEVEVPPPSTSAAISETESSSPGHHSCDLCGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANHVELSRHAKCHLAGDAAERHAKRVSQDKPYVCATCLKTFARKEHLDNHTRSHTGETPYRCQYCAKSFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLTNHMRSHTNDTPFRCAMCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPKAFSRKEHLTNHIRQHTGDSPHVCSYCQKCFSRKEHLVIHIRQHTGETPYKCTFCAKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHFKQHTGNTPHTCKVCSKSFTRKEHLATHMRSHSCGERPYICGECGKSFPLKGNLLFHVRSHKNTNAESKLFRCDVCSKEFLSKTHLASHRRMHESGEACAEHPEESHCDNNCDKEETDTKQELRTVVTENSSVPVESNDVTQNPQNNTNTVMQITSQAVRSAPPAAGTVGSVGAVPGAFAHATAPQHHTGTHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388726;
90% Identity: iTF_01388726;
80% Identity: -