Sfor009915.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000072.1:1022407-1031895[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-07 0.00013 21.8 0.0 4 36 204 237 201 241 0.89 2 2 3.9 5.2e+03 -2.5 0.2 32 43 445 456 445 457 0.87
Sequence Information
- Coding Sequence
- ATGGCATTTTCGGGAAAATGCAAATGCTGTCTTGATAATGGTTTCTTTAAAAGTATTTGGTCCGAGAATCAGTTTCATGGGGAGACAGAAGTGTATGGTGAAATGATCTCACAATGCTTCTCCTTGTCGTGGCATAAACCCTCCGACAGAATAGAGCTTATATGCGAGGAATGTATACGAAGACTTCGGGACGCATATTCCTTCAAAGAACAAATAATGCAGTCAGCCGGAGCTCTAAAAAAGTATTTGGACGTGAAAGTTAAGAGTGAGAAAGACTCCTCATCCGAGGATCTAGATCTGGTGAAACTCGAACCGGTGACAGAAGATGATGACGTTGATGAATATATGGAGGTGGAATATTTGCAAGATGATGATGATGAGGACTTTAATGTCGCCGCCGATGACGAGAAAGCGACGTCCACGTCAAAATCCAAAAGTAAAGTAGAAATTCGAAATTCAAATCGCGACGATTACGAACCGGACGAAGACGAGGAACAGTCTGACGATGAACACGTGAAGCCGAAGTCTCCGATTGGACGGAATAATAATAAGAAGAAGAAGAAGAAGAAATGTCGAAGAAGAAGAACGTACAGAAATTACACGCAGCAACAACTCAAAGAAGCCATCGAAGCTGTCAGGGAGAATAGGCTAACACTAGTGGAGGCGTCGCTTAAATTTAATATTCCAAAGAAAACTCTCGCTTACAAGTGGGTCCAAAAACCAAAGGACGCACTCGAAGCTCAAATAAAAGAAGAGGAACGTTACGTACAAGTGTCGTTCCTGAAAGACATTGAGAACGTACTCGAGTACACGAACGCCGTGCCCTTCAAGACTACCCACTCGAGATTCTATTGCATATATTGCGGTGCGCCGCCGCGATACGACGAATTCGAAGATCTAAAGGAGCACATCAAAGCGGAGCACCCCACGGTCGAGGACAGGACCGGGGATCGTCTGGACGGTGCCATGAAACCGACTTGGCTCAACGAGGTGCTCCGCGTTGACATCGAGGACTTGCATTGCACCGTTTGCATGATAACGTTGGACGGTTGGAACACTATGATCGAACATCTGGCCACCGTGCACACGGTGGAACTGAACGAGGGCTACACGAGGATAATACCGTACACGATAAAGTCGAACTTTCCATGCGCACTGTGCAAGGTGTCGTGTCAGAACTATCACTACCTGGACACGCACATGAACGCTCACTACAACAATTACATATGTGCAGAGTGCGGTGACAGTTACTTGACAAAGAGTCGGTACGATAAGCATCTGGAGACGCACGAGAACGGAAGATATCCGTGCACGGAGTGCGACAAGGTGTTCACACTGGAGAAGTACATGAGGAAACACATGAAGTACTCGCACGTATCTAACTCGGTCAGGTGTAGACACTGCGACGAGAGGTTCCACGGTGAATACCATAGACACCTTCACATGCTCGAAGCGCACAAGGACAAGGTGAAGATTGTGACTTGTGAAATGTGCGGTGCAGTGTTCGATTGGCGTCCGTACTATGTGAAACATTTGAAACGTTACCACAACAGTGAAAGTGTGTATCAGTGCAACCGTTGCGATAGTAAATTCTGTTCTGTGTCCGATTTGAGAGTGCACAAGGAGACGCACAGCGGTGAGAAGAGGTTTCGGTGTGACATATGCGACAGGAGATACTCGTCGGCCATGTGGTTGAAGAATCACATGAAGAAGCACAACGACAGTAATAAGACGACAGTTGTGATTGTGACTGAGAAGAAGGCGGAGAGCGAAGTTAATGATTCTTCTTGA
- Protein Sequence
- MAFSGKCKCCLDNGFFKSIWSENQFHGETEVYGEMISQCFSLSWHKPSDRIELICEECIRRLRDAYSFKEQIMQSAGALKKYLDVKVKSEKDSSSEDLDLVKLEPVTEDDDVDEYMEVEYLQDDDDEDFNVAADDEKATSTSKSKSKVEIRNSNRDDYEPDEDEEQSDDEHVKPKSPIGRNNNKKKKKKKCRRRRTYRNYTQQQLKEAIEAVRENRLTLVEASLKFNIPKKTLAYKWVQKPKDALEAQIKEEERYVQVSFLKDIENVLEYTNAVPFKTTHSRFYCIYCGAPPRYDEFEDLKEHIKAEHPTVEDRTGDRLDGAMKPTWLNEVLRVDIEDLHCTVCMITLDGWNTMIEHLATVHTVELNEGYTRIIPYTIKSNFPCALCKVSCQNYHYLDTHMNAHYNNYICAECGDSYLTKSRYDKHLETHENGRYPCTECDKVFTLEKYMRKHMKYSHVSNSVRCRHCDERFHGEYHRHLHMLEAHKDKVKIVTCEMCGAVFDWRPYYVKHLKRYHNSESVYQCNRCDSKFCSVSDLRVHKETHSGEKRFRCDICDRRYSSAMWLKNHMKKHNDSNKTTVVIVTEKKAESEVNDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389016;
- 90% Identity
- iTF_01387214;
- 80% Identity
- iTF_01387214;