Sfor012468.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000093.1:750072-750632[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-08 3.5e-05 23.7 0.0 2 36 11 45 10 49 0.91 2 2 0.6 7.9e+02 0.1 0.0 30 45 121 136 121 136 0.86
Sequence Information
- Coding Sequence
- ATGGAAAAGAAGATACGCAAGAGGTACATTAACGAAGATCTAGTTACTACTTTAGAGTCAATTAAACAAGGTACGAGTATTTACCAAGCATCACGTCAATTTAATATACCAGAGACAACATTAAGAAACAAGCGAGATGGTATATATGACAATAACACTTGTGGTGTACAGCCTGTGCTAAATATTCAAGAGGAGAAGCTAGTTGTCGATTGGATTCACTATCTTGGTACATGTGGATTTACAGTCACTAAAGAACAGTTGCTAGATACTGTAGCTGCACTTGTCAAGAATTTAAAACGATCTAATCCATTTAAAGATGGAAGGCCTGGAAAAAACTGGTTTTTGGGTTTTTTAAAACGACATCCGACACTGAGCAAACGCGTGCCAGAAAATCTTCCTTTGAGTAGAAATAAGATCACAGAAGAATCAATACgagcgtggtttggaagagttcactcttattttgaaagtaacgatttgcttcaagtttttgatgacccaagacgcatatttaactgcgatgaaacagctttttttttatgtccgaaggagaagaggtag
- Protein Sequence
- MEKKIRKRYINEDLVTTLESIKQGTSIYQASRQFNIPETTLRNKRDGIYDNNTCGVQPVLNIQEEKLVVDWIHYLGTCGFTVTKEQLLDTVAALVKNLKRSNPFKDGRPGKNWFLGFLKRHPTLSKRVPENLPLSRNKITEESIRAWFGRVHSYFESNDLLQVFDDPRRIFNCDETAFFLCPKEKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -