Sfor019151.1
Basic Information
- Insect
- Synanthedon formicaeformis
- Gene Symbol
- -
- Assembly
- GCA_945859765.1
- Location
- CAMAON010000204.1:219089-228684[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-11 3.4e-08 33.3 0.0 2 36 186 220 185 222 0.94 2 2 9.2 1.2e+04 -3.7 0.0 27 34 259 266 259 270 0.82
Sequence Information
- Coding Sequence
- ATGTCTGTATTTTCACGCTTGCTGACAGACAAGAATATCGGGGCGTTCCGAAGCATTGGAGAGAAGACGGCTTCGCTATTCGAAAGAAAGAAGAAGGATGTCGAACAAGTAGCCACAGAGAAGGCACAGGAAGCGGATGCAGTGGTTCAAGATCAGATTCAAAAAACTGGTGAACTGGTGAGCGGTGTTCAAAAGTCTGCAAACGACGCCGCCACTTCAGCTGCTGAAACGAAGAACGCTGCCATCGACGCTGTCAACAAGGAGCTGAACAAGGTTTCCAACGCTGCTGGTGAAGCTAAGGGCGCCGTTGACAAAGCCGTTGCTGATGGGAGGAAAGTTGTTGATACTTCTAAAGACTCTTTGGCGACCATAGCCGACAACACAAAGAAAGCAGCTGAATCTGCATTCAATACGGCTAAAGATACTCTAAGTAGCACGGTTGAGGATACAAAATCTGCCGCCCAGTCCGCGTACGACACCAGCAAGACCTACGTCGACAGTGGCAAAGATATGCCAAATATTTTCAAACGGACGTCGCAGCAGCAGACATGGGACCCGAGTGCCATGGAAAAAGCTATAAGAGCTGTTAGAAATGAAGAAATGGGCTTCCTCAAGGCTAGCAAAACATTTAAAGTCCCTCGATCGACTctcaaacgacacacaacagacatggCTCTTGCTGAGCCGGAGGAAACACAACTAAATCTGACTAACAAAGAGAATGAGCCACCTGTTAGGGGAGCGTCTCCATCAATTCTGCGAGATACCTGGGAGGAAATACCAGCTGCGACGTTGGAACCGGAAGCAAGGACAACCCGGGAAGAAACACCAGCAGCGACTCCGCAACTGTTCGAACAGGACGCAAGGACAACTCGGGAAGAAACACCAGCAGCGACGCCGCTAATGTTGGAACGGGACACAAGGACAACCCGGGAAGAAATACCAACAACGACGCCGCTAATATTGAAACCGGAAGCAAGGACAACCTGGGAAGAAACATCAGCAGCCACTCCGCCAATGTTGGAACCGGAAGCAAGTACAACTTTCGAAAAAACACCAGAAGCTACGCCACCACAGTTGAATCCGCGGACAGGGATATTCACGCCGCCAATGCTAGATCCACAACCAAGCTCTTCATTCGCAGTAACGCCTAAAGATTTGTTTCCGATTCCCAAGGCTTTGCCTAAAACAAAGAAAATTAACAAAAGGAGGGGACGTACAGTTATACTAACTAGCAGTCCATACAAAAATGAGTTGAAACGGGAACAAAAGAAAGCACCAAAGAGAGCAGCTAAAATGAAAGTTCCAGAGAAAAGTGTCAAAAAATCTAAACCTAAAACCAGGAAACGAGCCAATAACGCTGAGGATGAGATGAATGACGATAACGACCCTGAATGCCTTTACTGTAAAGAAGTCTGGTCTAAGTCTAAACATGATGATGGCTGGATACAGTGTTCTAATTGTAAACGATGGGCTCATGAAGCATGCTCTGGTTGTGACAGCGAAGACAATGACTATGTCTGCGAATTTTGTTCAGAATAG
- Protein Sequence
- MSVFSRLLTDKNIGAFRSIGEKTASLFERKKKDVEQVATEKAQEADAVVQDQIQKTGELVSGVQKSANDAATSAAETKNAAIDAVNKELNKVSNAAGEAKGAVDKAVADGRKVVDTSKDSLATIADNTKKAAESAFNTAKDTLSSTVEDTKSAAQSAYDTSKTYVDSGKDMPNIFKRTSQQQTWDPSAMEKAIRAVRNEEMGFLKASKTFKVPRSTLKRHTTDMALAEPEETQLNLTNKENEPPVRGASPSILRDTWEEIPAATLEPEARTTREETPAATPQLFEQDARTTREETPAATPLMLERDTRTTREEIPTTTPLILKPEARTTWEETSAATPPMLEPEASTTFEKTPEATPPQLNPRTGIFTPPMLDPQPSSSFAVTPKDLFPIPKALPKTKKINKRRGRTVILTSSPYKNELKREQKKAPKRAAKMKVPEKSVKKSKPKTRKRANNAEDEMNDDNDPECLYCKEVWSKSKHDDGWIQCSNCKRWAHEACSGCDSEDNDYVCEFCSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -