Sand001461.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- stc
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000070.1:5186-11709[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00085 10 6.7 7.5 1 11 11 21 11 22 0.95 2 8 0.021 2.5e+02 2.2 0.6 4 10 26 32 25 32 0.92 3 8 1.2e-06 0.014 15.8 13.2 3 19 40 56 38 56 0.91 4 8 1 1.2e+04 -3.2 0.5 6 10 85 89 84 89 0.78 5 8 0.00023 2.7 8.5 9.0 10 18 103 111 100 112 0.94 6 8 6.9e-09 8.2e-05 22.9 12.8 1 17 148 166 148 172 0.84 7 8 0.00032 3.8 8.0 4.9 1 12 178 188 178 189 0.96 8 8 1.3 1.6e+04 -3.5 1.2 14 18 207 214 207 215 0.71
Sequence Information
- Coding Sequence
- ATGGAACTGTGGAACAAACAGAAACTGTCGTGCGGTCGACACCGTTGCCGCGCGACCTGTTGCGTGGCGACCTCCCACCGCTGCGCTGTGGTTTGCGGCCGTATGCTGTCCTGCCAACTCCATCGCTGCCAGGAGTTCTGCCACACGGGACACTGCGCGCCCTGCTCCACGCTAAGCTTCGAGGAGGTGCGATGTGCGTGCGGTGCTCAAGCGTTGCTGCCGCCAGTGCGGTGCGGGGCTCGCGCTCCCGCCTGCAGCGCTCCCTGTCGGCGCACCCGCGCGTGCGCACACAGCCCGCACCACAACTGCCACGCCGGCGACTGCCCGCCCTGCGTTGTGCTCACCACCAAGCGCTGCTACGGAGGCCACGAGGAGCGCAAGACGATTCCGTGTTCTCAAAAGGAGTTCTCGTGCGGTCTCCCTTGCGGCAAGCCGTTGCCTTGCGGGAAGCACACTTGCATAAAAATCTGTCATAAAGGACCCTGCGATACCGCCAAATGTACTCAGCCGTGCAACGAGAAACGTCCAAGCTGCGGGCATCCGTGCGCCGCGCCCTGTCACAGTAGCGATGCGGCGGAAAGCAGTACCGCGTCCGACGCGGGCCCCAGCAGTCGCAGCAACTGTCCCAGCAGCGCGCCGTGTCGCCGGCTGGTGCGGGCCACTTGTCAGTGCGGTCGGCGGCACGCCGAGAGACCGTGCTTCGAAAACTCCAGAGACTATTCCAAAATGATGAGTGCTCTGGCGGCTACGAAGATTCAGGAAGGTGGCTCTGTGGATTTGTCTGAGGTGCAGCGTCCAAGTGCAATGCTTAAAACGTTGGAATGCGACGACGAATGCCGAGCCGAGGCTCGCTCGCGTGCGCTGGCCCTCGCGCTACAGATCCGAAATCCGGACGTGTCGTCCAAATTGGCGCCGCGGTACAGCGACCACGTGCGCGCCCTGGCGGGACGCGAACCCGCGTTCGCACAAACGGTCCACGAACGCCTGACCGATCTCGTGCAGCTCGCCAAGAAGTCGAAACAGAAGACCCGTTCGCATTCTTTCCCATCGATGAACCGTCAGAAAAGACAGTTTATACATGAACTGTGCGAGCACTTTGGCTGCGAGAGTGTTGCTTACGACGCAGAGCCCAATAGAAACGTCGTTGCCACAGCTGACAAGGAGAAGTCATGGTTGCCGGCGATGTCGGTGCTAGAGGTGTTAGCCCGCGAGGCGGGGAAGCGACGCGTGCCGGGGCCCGTCGTTAGGCCTGCCACTGCCGCACCACCCAAGTGTTCAAGTGGTTGGGCGACGTTGACGTCGACCAATGCGTGGGCGGCTAGAAGTCAGCCGAAGCCCACTCCCACTCATACGCCCACGCCCACTCCCACGCCAGAGGCGCCCAAGATAGACTACTTCGACAACCCGCCGGACAACTAG
- Protein Sequence
- MELWNKQKLSCGRHRCRATCCVATSHRCAVVCGRMLSCQLHRCQEFCHTGHCAPCSTLSFEEVRCACGAQALLPPVRCGARAPACSAPCRRTRACAHSPHHNCHAGDCPPCVVLTTKRCYGGHEERKTIPCSQKEFSCGLPCGKPLPCGKHTCIKICHKGPCDTAKCTQPCNEKRPSCGHPCAAPCHSSDAAESSTASDAGPSSRSNCPSSAPCRRLVRATCQCGRRHAERPCFENSRDYSKMMSALAATKIQEGGSVDLSEVQRPSAMLKTLECDDECRAEARSRALALALQIRNPDVSSKLAPRYSDHVRALAGREPAFAQTVHERLTDLVQLAKKSKQKTRSHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVVRPATAAPPKCSSGWATLTSTNAWAARSQPKPTPTHTPTPTPTPEAPKIDYFDNPPDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -