Sand012597.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000779.1:2734-13623[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4 2.1e+02 3.0 0.1 8 22 149 163 148 163 0.91 2 11 0.00038 0.024 15.5 1.0 1 23 227 250 227 250 0.98 3 11 0.38 24 6.0 0.7 3 23 267 287 265 287 0.93 4 11 0.0005 0.031 15.1 0.1 2 23 327 349 326 349 0.96 5 11 0.0081 0.51 11.3 0.5 2 23 351 373 351 373 0.94 6 11 7.7e-06 0.00048 20.8 0.6 2 23 380 401 379 401 0.97 7 11 0.0018 0.11 13.3 2.6 3 22 412 431 410 435 0.93 8 11 0.00062 0.039 14.8 0.9 1 23 439 462 439 462 0.96 9 11 8.4e-05 0.0052 17.5 1.6 1 23 468 491 468 491 0.98 10 11 0.031 1.9 9.4 3.5 1 23 499 521 499 521 0.97 11 11 8.4e-06 0.00052 20.7 0.3 1 23 527 550 527 550 0.95
Sequence Information
- Coding Sequence
- ATGGATTTAAGAAAGGCACTAAATATTTGTCACGCGTGTTTAAGTTCAGATCGTCAATTATATCCGTTGTCGAAGTGCCCATCTTTAATTCAGCTTAGTTTCTTGCCGAGAACAGCCACTGTGTGTTGGGAATGTAGTAACGAAGTACTAAGGTTTTGTAAATTCATAACAAAAGCAATTACAGCACAAAGGAAATTGGCTAATGTCCAACATACTGATGACATATTATGTCTAAGTACTTTGGCCATTTCAAAGCAGCAACCTCTCTTTGAATTCAAACATATTGATGACCCTCTAACCCTAGAGTTTGACGAAGCCACAAATATTAAGGAAGAAGTGTGTAGTTCAGACACAGAAACCGCCTCTGAGCAAACAGATAACGCAGAGGAGGACATTGAGGATAATTTAGAGGAAAATTTAATCAATGATGAGAATGTTGGTAAAAGAATGTTTGAGTCACAAACAAACATCAATGTGCATATGAAAACCGAAATTGATAAGGATAAACAAAAAATTACATATAATGAAAAGATTGAAACTCTTTTAGATATTGACAACAAATTATCAGAAGTGTCTGAAGAAGTGATAAAGAAGATATTAGTAACGCAATTGACTCACGAGGAAGTACTTAAGAGAAGAGACCAGCAGAGGAGACGTCACAAATATCGGAATTCTCTTTACAAATGCGATTTTTGTATTTTAGGCTTTAAAAATAAGGAAAATTTGAATGAACACATAAAGATGAAGCACAGTCATATAGATTATAATAATGTGAACAAACCAGGAGAGCTCACAGATTGCGACGTCTGTAAAATACGCTTCAAATCGCCAATTGTAGCGCAGAGTCATCACGAGCGTCATTACATGCACTACAAATGTCGACTGTGCGGATATGAAGCCTGCGCTCTACACGTCATTGTGGCTCACTGTGAGGACGAACACGGGAGGAAAACAGTCGGACGGACACCCGTGACACTCACCTGTGATATTTGCTCGAAGGTTTTATCCACCCCTGAGGAGTATTCGGAACATTTGAATACAGAACACAGGACTTGTGAATTATGTGGTTATAAAGTGAAAAGAAAGGGTTCGATTAGATATCATATGAGTCTAATGCACCCACAAAAAGGATACTCAACCTGCGATCTCTGTCCAAAAAATTTTAAGAGCAGGTATACGTTGGAACTGCACATGGCTACTCATGATGAGAATATAGCAAAGAAACTGTCGCATTGCAAAATTTGCAATGTGCAATTTAAAAATTTACGTGATTATAGGAAACATCTTAGAACAAGTGTGAATCACGTGAAAGGATATCAATGTCCTGAATGCAATAAAAAGTTTGCTTCGGAAGTTTATGGGAGGAGGCATTATAAAGTTTATCATCTAAAGAAATCAGGGTACAAATGCGAAGAGTGTAACAAAATGTTCTTGACAGTGTCGACATTGAAAACACATCGGCGAGTGAATCACGGACTGTATGGACCAAGAAATTATAAATGCGATGTTTGCGAAAAGAAATTCTATTGTAGTTCGGTACTAAAATCACACAAGTTAGTTCACTCGGAGCAGCGACGATTCATGTGCTCGGAATGCGGCGAAACCTTCAAGCAGTCCGGGGCTTTATTCACGCACACGAAGGCAGTGCACAGAATTGCGAAGAAGCTCTACAAAAAGCAGAAGAATAAATAA
- Protein Sequence
- MDLRKALNICHACLSSDRQLYPLSKCPSLIQLSFLPRTATVCWECSNEVLRFCKFITKAITAQRKLANVQHTDDILCLSTLAISKQQPLFEFKHIDDPLTLEFDEATNIKEEVCSSDTETASEQTDNAEEDIEDNLEENLINDENVGKRMFESQTNINVHMKTEIDKDKQKITYNEKIETLLDIDNKLSEVSEEVIKKILVTQLTHEEVLKRRDQQRRRHKYRNSLYKCDFCILGFKNKENLNEHIKMKHSHIDYNNVNKPGELTDCDVCKIRFKSPIVAQSHHERHYMHYKCRLCGYEACALHVIVAHCEDEHGRKTVGRTPVTLTCDICSKVLSTPEEYSEHLNTEHRTCELCGYKVKRKGSIRYHMSLMHPQKGYSTCDLCPKNFKSRYTLELHMATHDENIAKKLSHCKICNVQFKNLRDYRKHLRTSVNHVKGYQCPECNKKFASEVYGRRHYKVYHLKKSGYKCEECNKMFLTVSTLKTHRRVNHGLYGPRNYKCDVCEKKFYCSSVLKSHKLVHSEQRRFMCSECGETFKQSGALFTHTKAVHRIAKKLYKKQKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387947;
- 90% Identity
- -
- 80% Identity
- -