Sand016030.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020001135.1:46047-52276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 0.85 10.6 2.6 2 23 84 105 83 105 0.96 2 12 0.025 1.6 9.7 0.4 2 23 112 134 111 134 0.94 3 12 0.34 21 6.2 0.2 2 23 142 164 141 164 0.90 4 12 6.5e-07 4.1e-05 24.2 3.7 1 23 170 192 170 192 0.98 5 12 7.1e-06 0.00044 20.9 1.7 1 23 198 220 198 220 0.98 6 12 1.8e-05 0.0011 19.7 2.2 1 23 226 250 226 250 0.93 7 12 0.037 2.3 9.2 1.1 3 19 266 282 265 287 0.89 8 12 0.00059 0.037 14.9 2.7 1 19 662 680 662 684 0.91 9 12 0.00011 0.007 17.1 4.2 1 23 691 714 691 714 0.98 10 12 0.13 8.1 7.5 1.0 1 23 723 746 723 746 0.94 11 12 0.034 2.1 9.3 5.2 1 23 752 776 752 776 0.96 12 12 3.2e-05 0.002 18.9 2.0 1 21 782 802 782 803 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCAAACGATGCTAATATAACGAGCGTTGACACGAATTTATCATTCTTTCATCTTCCATTTGTAGATAATGCTAACACCGATTTAGTATTCAGTGACCGAAATAAGTCTCAGGAGAGTGCATACGATGACTTCCAAAATGCTCTGCCGTCACACACTTATTTGGGTACAGACGATGTACTGGCGCAGATTTTATCTGCTGACGAGCCTTTGGAAGAGCCTGACCTGAATGGCCCTACGACATTGCATTGTGAGATATGTAAGAAGAAATTCGATAAAGCAAAAAAATACTATGGCCATTTGAGGGTGCATTCTAAAGATAATGTTTGGGTTTGTGATAAATGTCCGGACAAGAAATTTTCTGTGAAACAGCAATTAATGAAGCATAGTTTGATACATACACCATTGAGAAAGATATGGCCATGCCCGCAATGTAGTATGACTTTTGAAGCATTGTGGAGGCTGCAACAACATTTATTTTATAAACATTTGAATTACAGAACACACAAATGTGACCAGTGTGACAAAGTATTTAATAAATCCTCTGACTTAAAAAAGCATATGGAGAAGCACAGTGATAGAAAAAGGTTCAGTTGTCCCAAATGTGGTGCGAAATTCAAACTGAAATCAAATATGAAGAGACATTTGCTACGACATGACAATAAGCAGACTTTCGTTTGTTCCGGATGCAACAGATCTTACACACAGTTGGTTAGTTTAACACGTCACATGAAGCGTTGCCCACATTATATTAATAGGAGTGATACAAATGAGCCAAACACAAGGAACCTCTGTAGGATTTGTGGTTTGACTTTTCCATATAGAACTAACTTATTGGAGCATTGTATTAGGCAACACACCAACCCACCAGAAGATAAAAAGGAAAAATCCAATCAAGTAAATGTAGAATCAAATCGTACAGTAGATAATATCGTAGACGATATTTTGTCTGTTGAAGCTGATTATTTAAAAATGGCCACACCTAATGAAATATTGAACGTTTATAATAATCAAAACGAATCTGAAGCGAATGCCGATAATCGTGTTCAAAAAGAATTTTTAAAAGAAATGAATCAACTACACATTCTCGACGATGAATTATTTTACAACGATTTAGACATAGATTGTTTACAAAGTAATCATATGTTCAATATGAACACTAATGACATGGATTACATTACCATGGACAGAAACAATGAAGAATGTCATTTGACTGCAGAATTGAATGACAATAATGGTATAGACGATGGTATAATGAATTCTCTGTGTCACGTGAAGTGTAAATATTTACCCGATGAGTTTTTAAATGTGACAGAGGAAGTTCCGTCTTTAGAAGAAACGCACATTAACAAAGTTCCACCATTATCTATAAACGATTGTTCCACAATATTCGAGAGTGATGTAGATTTAGAAGCAAGCACTAATTTAGCAGCAAACCTAAATCAGTTAATAGGAGAGAACACGGTTCAATATATATCGACAGAGGAAGATGATACTTTCATTATAAGTTTAAACTGTGGCATAGATGCGGAACAATTGACCGGAATGCTTAACATTGGTCGTGAATTAGTGGACGATAATAGAGTTGCAAATGGTATAGCTGAATTAAAAACTAATGATATTCCAAAAACCAACATAAAAGATAGCGATGTTGAAACAATTGAATGTATAATGAAAAATAATAAGAGACTTGATCAGAACACGGAAGTTGAAGACGGTGATATAATTGGGAGTGTTTCCGAAAAAATCAAAATTAAAAATAGTAAACGTAAAAAAAGTATAAAAGGAAACAAAGGCAAAGTTGGAACATTAGAAAGTGCTAGTAGCATTGATGAGAGAGATAATAATAGTGCAGAAGATGAAGATATCATTGAATCTATTAAAATTGAGATTGATAATGAAGATTTAAAAGCGAACCACCTTGGTGTTAAGAAGTCCGAGAAGACTAACGGCGTTGAGAAAATAACTAAAAGAGTTATATACGTTTGTCTTATATGCAATAAAACGTTTTCAAAGAGGGATAACTATAATTCGCACTGTGCCGTTCACGAGCCGAAGCTGCGTCGGCACAAGTGCGACGTGTGCGGCGACCGGTTCAGCTACAAGTCGACGCTCAACAAGCACTACAAGACGCAGCACACGCCCTGCGTTCTCTCCCATCCGCACTCCTGCGCACTTTGCCAGCGACACTTCGCCGCCGCTTGGATGTTGAAGAATCACGAAGAGCGCGACCACAAAAAGATGACTCCTTTCCATTGCGATTACAAGGACTGCAACAGGAAATTCTACAAGAAATTTGATCTGGTCGTACACAAGAGGTACCACAACGGCGAGCGACCGCACAAGTGCTCCGAGTGCGGTTTGTCGTTCGCACATGTGTCTCATCTGCGCCGACACGCGCGCAATGTCGCCTGCGCCAAACAGTTTGTACTTTTTTCACTAAATTTACAAATAATCATTTAG
- Protein Sequence
- MESNDANITSVDTNLSFFHLPFVDNANTDLVFSDRNKSQESAYDDFQNALPSHTYLGTDDVLAQILSADEPLEEPDLNGPTTLHCEICKKKFDKAKKYYGHLRVHSKDNVWVCDKCPDKKFSVKQQLMKHSLIHTPLRKIWPCPQCSMTFEALWRLQQHLFYKHLNYRTHKCDQCDKVFNKSSDLKKHMEKHSDRKRFSCPKCGAKFKLKSNMKRHLLRHDNKQTFVCSGCNRSYTQLVSLTRHMKRCPHYINRSDTNEPNTRNLCRICGLTFPYRTNLLEHCIRQHTNPPEDKKEKSNQVNVESNRTVDNIVDDILSVEADYLKMATPNEILNVYNNQNESEANADNRVQKEFLKEMNQLHILDDELFYNDLDIDCLQSNHMFNMNTNDMDYITMDRNNEECHLTAELNDNNGIDDGIMNSLCHVKCKYLPDEFLNVTEEVPSLEETHINKVPPLSINDCSTIFESDVDLEASTNLAANLNQLIGENTVQYISTEEDDTFIISLNCGIDAEQLTGMLNIGRELVDDNRVANGIAELKTNDIPKTNIKDSDVETIECIMKNNKRLDQNTEVEDGDIIGSVSEKIKIKNSKRKKSIKGNKGKVGTLESASSIDERDNNSAEDEDIIESIKIEIDNEDLKANHLGVKKSEKTNGVEKITKRVIYVCLICNKTFSKRDNYNSHCAVHEPKLRRHKCDVCGDRFSYKSTLNKHYKTQHTPCVLSHPHSCALCQRHFAAAWMLKNHEERDHKKMTPFHCDYKDCNRKFYKKFDLVVHKRYHNGERPHKCSECGLSFAHVSHLRRHARNVACAKQFVLFSLNLQIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388818;
- 90% Identity
- iTF_01386998;
- 80% Identity
- -