Sand015333.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020001038.1:4512-13991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.079 4.9 8.2 1.0 1 23 82 104 82 104 0.92 2 17 0.0021 0.13 13.1 0.2 2 23 132 154 131 154 0.94 3 17 3.1e-05 0.0019 18.9 3.3 2 23 178 199 177 199 0.96 4 17 0.081 5 8.2 0.1 2 23 203 224 202 224 0.95 5 17 0.45 28 5.8 0.3 1 17 229 245 229 246 0.87 6 17 0.32 20 6.3 2.6 1 23 282 304 282 304 0.97 7 17 0.03 1.9 9.5 0.9 2 23 332 354 331 354 0.92 8 17 3.8 2.4e+02 2.9 0.9 1 23 414 437 414 437 0.84 9 17 0.014 0.85 10.6 0.4 2 23 465 487 464 487 0.96 10 17 0.00013 0.0079 17.0 2.2 1 23 510 532 510 532 0.98 11 17 0.85 53 4.9 0.2 2 23 537 558 536 558 0.92 12 17 0.00014 0.0086 16.9 1.5 2 23 564 586 563 586 0.94 13 17 0.7 44 5.2 2.3 2 23 596 618 595 618 0.94 14 17 0.00051 0.032 15.1 5.8 1 23 624 647 624 647 0.96 15 17 1.2e-05 0.00077 20.1 2.9 1 23 651 673 651 673 0.98 16 17 9.9e-06 0.00061 20.5 2.5 1 23 679 701 679 701 0.98 17 17 0.011 0.71 10.8 1.2 1 19 706 724 706 726 0.98
Sequence Information
- Coding Sequence
- ATGCGCGGCGGCCGTACCTCGCCCCGCACGCTCTCGTCTCACCGCGCAACGGTCCCGTCCCTCCCCGCTTGCCTCGCTTACCGCCAAAATGGTCTGAGAACTATCTATTGCGCAGGAGTAACAACCATCCAGAAGCCGGGACCGAGAACAAGTATCTGGCAAATGACCGTTTCCGAACGCGAGAACGCGGCGACCTTTTTAGAACACACGACGGTTAAGCCCTTCTTCTATCAGCAAGCAAATTTCAAATGCTTTTACTGCAACGAAGTGTTCCCAGAAATATATTCGGTTTTACAACACACCTCGTTCCACACAACGCCGGAGAGAAGCAGTCTACTGAAGCATCACTTGAGAAAGGGCAAACGGGTCATCAAAGTTGACATTTCAGCGTTGAAATGCAGGATTTGCGACCAGAAATACTCTGATCTTGACGATATACGAAAGCATTTGATCAACGGCCACAAGAAAGAGTTCAACACGGCTGGCAATGGATTGATAGCTTACGATTTGAGTGTTAACAATGGCTTGCTATCCTGTCACAAATGTGGGAAGAACTTCAACTCTTTCTTCCttctgaaccgtcacatgaacgcacacttcagcgtcgtctgcgaaacgtgcggtttgggtttcatgtcgtaccagcgtctaataaatcacaagatcgtacaccagaacggcgtgcacaaatgcgaaaaatgccaagaagtttatccgaccaaactgaagttaagGGATCGCAGCGGGAAGAAAACAAGGCGCCATCACGAGCATTTGGGAGATGACAGTATCGGAGAGACAGAACGCGGCGACATTTCTCGAACACACGACAATATATATTTCTTTAAGTGCTTCTTCTGTCACGAAAACTATTCGGAAATCAATGCGTTGCTACAACACACCTCGTCTCACGTGATACCCGAAAGACCAAAGATACTTAAGGAATTGTTACCGAAAGGCAAACGCACGATCAAAGTGGATATATCGAATCTCAAATGCAGAATCTGTGACAGGCGCTTCGACGATTTGAACAAGACACGTCAACATTTAAGCGAAGAACACAAAATAGATTTCACACAATCGGGAAACGGGCTGATAGCGTACAATCTAGCCACGAAGAATGAACCAAAACCAACGCCAAGATCGAGCATATGGCAGCTTACGTTAGGGGAAAGGAACAACGCTTCGATTTTTATACAATTCACGACTGTAAGGCCTTTCATTTTTGGTGGTTCAAGTTTTAAATGTTTTTATTGCTCAAAGTACGATTCCGACATAACCTCCTTACTCGCCCACACATCGTTATCGCATAAAGTTATTGACAGGGGACTGATTCTGCAAAAATATTTGCCCAAAGGAAAACGGACTTTACAAGTTGACATTTCTAACCTGAAATGTCGTCTGTGTCAAGAAAAATATTCAAATTTGGACACGGTAAAAGAGCATTTAGAAACGGCTCACTCCAAACAATTCTTTTTCGCGAGCAATGGCATGACGGAATACAATATGGAATTAAAAAATGGCGCTTACATCTGTCACATTTGTTCTAAAGAATACTATTCTTTTTCACTTTTGAATTCGCACATAAACAGTCACGTTGGTAAAGTAGTCTGTGAGAAATGCGGCGCGGGATTTCTGAATCAGTACATTTTGAAGAAACACAAAGAGCTACACTTGGACAGGAGTTTGGAGTGTCAATTTTGCGATAAAATTTTCAAGAAGAGAAGTCAGTTGAAGTATCATACTGAAATCACTCACAAAGGGAAAGACAGGGCGGCTCCACAGAGGTGCAGTCTTTGCCAAGAAGTATTCAAAGAGCATTACAGAAAAATATCACACTTGAAATCTGTACACGGAATTGTCAAAACATTCAACTGTCATCTGTGTAAAACGACATTTAATACGAGAAGGAATTTGACAGAGCACACGAACAAATATCACACAGAGAAGTATAAGTGTAATGTGTGCTCTAAATGTTTCATAATACGGTCCAAATTAGAACAACATATGCGAGGACATACGGGCGAAAGGAATTTTATATGTCCAGTGTGTAAAAAGGCGTATATGCATAAGATGACGCTACAAAAACACATGAGAAGTCATGGATCTTTTAAATATGTTTGCTCGAAATGTGGTAATGGTTTTCACACAAAAAGCGATTATTTGAAACATGATGAACAAATGCATTTAAATCAACTTTGTCAGTTAGATATTAAATAA
- Protein Sequence
- MRGGRTSPRTLSSHRATVPSLPACLAYRQNGLRTIYCAGVTTIQKPGPRTSIWQMTVSERENAATFLEHTTVKPFFYQQANFKCFYCNEVFPEIYSVLQHTSFHTTPERSSLLKHHLRKGKRVIKVDISALKCRICDQKYSDLDDIRKHLINGHKKEFNTAGNGLIAYDLSVNNGLLSCHKCGKNFNSFFLLNRHMNAHFSVVCETCGLGFMSYQRLINHKIVHQNGVHKCEKCQEVYPTKLKLRDRSGKKTRRHHEHLGDDSIGETERGDISRTHDNIYFFKCFFCHENYSEINALLQHTSSHVIPERPKILKELLPKGKRTIKVDISNLKCRICDRRFDDLNKTRQHLSEEHKIDFTQSGNGLIAYNLATKNEPKPTPRSSIWQLTLGERNNASIFIQFTTVRPFIFGGSSFKCFYCSKYDSDITSLLAHTSLSHKVIDRGLILQKYLPKGKRTLQVDISNLKCRLCQEKYSNLDTVKEHLETAHSKQFFFASNGMTEYNMELKNGAYICHICSKEYYSFSLLNSHINSHVGKVVCEKCGAGFLNQYILKKHKELHLDRSLECQFCDKIFKKRSQLKYHTEITHKGKDRAAPQRCSLCQEVFKEHYRKISHLKSVHGIVKTFNCHLCKTTFNTRRNLTEHTNKYHTEKYKCNVCSKCFIIRSKLEQHMRGHTGERNFICPVCKKAYMHKMTLQKHMRSHGSFKYVCSKCGNGFHTKSDYLKHDEQMHLNQLCQLDIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -