Sand013289.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000845.1:124920-129975[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2e-05 0.0051 17.6 0.6 3 23 166 186 165 186 0.96 2 11 6.9 4.3e+02 2.1 0.1 2 23 191 212 191 212 0.92 3 11 0.72 45 5.2 5.7 2 23 219 241 218 241 0.96 4 11 0.003 0.19 12.7 0.6 3 20 251 268 249 272 0.93 5 11 3.8e-05 0.0024 18.6 1.0 1 23 277 299 277 299 0.97 6 11 0.0004 0.025 15.4 4.7 2 23 306 328 305 329 0.94 7 11 0.062 3.9 8.5 2.1 2 21 334 353 333 354 0.91 8 11 7.1e-07 4.4e-05 24.1 2.2 3 23 362 382 361 382 0.98 9 11 4.4e-05 0.0027 18.4 0.1 1 23 388 410 388 410 0.98 10 11 0.0001 0.0062 17.3 0.9 2 23 417 438 416 438 0.98 11 11 6e-07 3.7e-05 24.3 1.6 1 23 444 466 444 466 0.98
Sequence Information
- Coding Sequence
- ATGAAAATATGCAGGGCCTGTTTATCTACAGAAATTGAATTAATTCGTTTAGACGAACACTTTATAAATAAATATAATTTACTTACTAATCTCAATATAGTTTTATCAGATGATGTGCCACAATATTCGTGCGGGAATTGTTACTCGACTGTCGATTATTTCATAACATTTAGAGACAAATGCGTTTCCTCAGAGGAAGTTAAACATGAAAGAAAGCCTTATGAATGTCCAAATAATGAAAATATAGTTAATAATGAATCAAAGACAATAAGCAGTGACGATAATATCAAAGATGAGGTGAAAACAGAATACTATGACGATTGTAACTTGGACTTTCTGAATGAACACTTTGTTGATTTTGATGCTGTGCAGATTAAATTTGAAGTTGTCAATGATACAAAACCAAAAAAAGTCAGTAAGAAAAAGGCAAAAGTTCAACGAAATGTGAGGCTTAGGACAAAAACAGGAAATGTCCACGGAAATGCTCTTCTATTGTGTGGAATTTGTACGAAATCGTTTGATGACAAGAAATCATTGATGAAACATTTGGAAGACCACACGAAGGACAGACAGTGCGAGCTGTGCTACGACATATTTGCAACTGGGCCTCAATTACTCGCTCATAGATTTGAACACATACCGTTCCAACAAAAAAAATGCCACCTGTGCCACTCCAAGTTCCAATCGTCCGTTTATTTTGAATACCATTATATGATGTCTCATTGTAATGGAGTTTTCACAGACATTGCATGCAGGCATTGCGGTTTAAAATACAAGACACCGCGTGGTTTAAGAAAACACGTTTGGTCCTCACATTCTAATAACAAATTCATATGTGATATATGTTCTAAAGAATTTAATAACAAGCAAAGACTGAAAATGCATATTATGTCTCACAACTCACTGAAAACGTGCATATGTGATTTGTGTGGGTACTCGACAAAGTTTAATTCTAACTTGCGGACTCACATAATGAGAAAGCATCATCCGTCGCGATGTTTCTGCAAGAACTGTAATAAAGCCTTCATTGAACAAAGAAAATTAGATGAACACGAAAGAAAATGCGTAGATTTGGCCGGTATTTGCAATGTCTGCGGGAAAAAATTTAAAAATAAAAAAAGCATGAAGGTCCACATGAGAAGCCACAGCGATGAGAAGCGTTACAAGTGCGCGGAGTGCGGCGCAGCGTACAAAACCTCGGGCGGGCTGCAGGCGCACCGAGACCGGCACCGCGGCGAGCGCACCAAGCGCTGCCCCCACTGTCCCGCGCGCTTCTACTCCGCCAGCGTCCTCGTCAAGCATCGCCGCGTGCACACGGGTGAAAAACCATATGTTTGTAAAGTATGTCACAAAGGATTCACGGGGAACAACAACCTCAAGGTGCATATGAAAGTTCACGGCGAGTCGTGGGTTGTCAAGAAAAAGGACCATGACGAAAAGAAACATCTCAACATATTTAATTAA
- Protein Sequence
- MKICRACLSTEIELIRLDEHFINKYNLLTNLNIVLSDDVPQYSCGNCYSTVDYFITFRDKCVSSEEVKHERKPYECPNNENIVNNESKTISSDDNIKDEVKTEYYDDCNLDFLNEHFVDFDAVQIKFEVVNDTKPKKVSKKKAKVQRNVRLRTKTGNVHGNALLLCGICTKSFDDKKSLMKHLEDHTKDRQCELCYDIFATGPQLLAHRFEHIPFQQKKCHLCHSKFQSSVYFEYHYMMSHCNGVFTDIACRHCGLKYKTPRGLRKHVWSSHSNNKFICDICSKEFNNKQRLKMHIMSHNSLKTCICDLCGYSTKFNSNLRTHIMRKHHPSRCFCKNCNKAFIEQRKLDEHERKCVDLAGICNVCGKKFKNKKSMKVHMRSHSDEKRYKCAECGAAYKTSGGLQAHRDRHRGERTKRCPHCPARFYSASVLVKHRRVHTGEKPYVCKVCHKGFTGNNNLKVHMKVHGESWVVKKKDHDEKKHLNIFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387856; iTF_01388805; iTF_01387010;
- 90% Identity
- iTF_01387856;
- 80% Identity
- -