Sand002935.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Synanthedon andrenaeformis
Gene Symbol
-
Assembly
GCA_936447275.2
Location
CAKZFQ020000153.1:3084-27865[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.011 0.69 10.9 0.2 1 23 504 526 504 526 0.98
2 11 0.00042 0.026 15.3 2.8 1 23 537 559 537 559 0.94
3 11 2.7e-05 0.0017 19.1 0.9 1 23 565 587 565 587 0.99
4 11 7.8e-05 0.0049 17.6 2.7 1 23 594 616 594 616 0.99
5 11 2e-06 0.00012 22.7 0.9 1 23 622 644 622 644 0.94
6 11 9e-06 0.00056 20.6 0.1 1 23 650 672 650 672 0.98
7 11 5.4e-05 0.0034 18.1 0.6 3 23 680 701 678 701 0.95
8 11 2.7e-05 0.0017 19.1 3.5 1 23 707 730 707 730 0.98
9 11 3.7e-06 0.00023 21.8 0.3 2 23 737 758 736 758 0.97
10 11 0.00012 0.0073 17.1 1.3 1 23 764 786 764 786 0.96
11 11 0.0078 0.48 11.4 0.1 1 21 792 812 792 816 0.92

Sequence Information

Coding Sequence
ATGAGTCAACGATGCTTTATATGTAATTTGCTAATAGGACCTTCCCCAAAACAATCAACATTAATTTTTGAGGATGGGAATTCAGATTTTTATAAATTGGCCCTACCGTCGGGCAAGAAACTGGTAAATCTAATTTGCGATATAATAGATAAGAAAGTTGATCGAAATACAGCGCATTCTCCGTTCTTATGCAAAAAGTGTTATGTGCAATGTGTTGAGTATGATAATCTTAGTGTCAAGTTATCAAAAGTGAAATCAGAGATAACAGAGAAATACCAGAAAACCTTTGACAGTCACAACGGAAATAATAAGAAGGCTGTATCAACGACTTCATCTACTTTGGACTCAGTGCAAATAGTGAAGATACAGAGAACGGTTAAACCAAAAAATGTGTTGTTGCAAGAGTCACAATTACAGCCTTTGCCTCCCAATTACACGTTGGAGATCGGAGACGTTTCATCTGTACCTTTGCAGAACGAAACACTGAAACCGTCCACGGTTAATCTGAAAGTGACTGTCGGTTCGTCCGTTCTCACGCAAAGTATAAAAACGTCAACAGCCAAGACGCCCACCAAGAAAGCGGTCGTCGACAATGAAACAGAAGAGAACAGAGGTTTGCCTCTCCGAATAGAGGACCTGATAAACAAAAATAGGTCACCCACCTTGGAACCTGTGAACAAGTTTCCGATGCTAAGTAAAGATTCGCTAGATTCAATATTTAACGTGCTAACGGAGATAAGAAACGCAGACGATGGCAAGAGAGTGAAGCGAGTTCTCAATGTGTTTGAAAGTGGTGAGGAGCCGATGCAAATTGATAATCAAGCTTGTTCGTTTGCTGTTATAAATGCAAAAGAGACAGATCCCTTAAAGGATTTTGTCGAAGAAACCACATCAAGTGCAGAGTCTAAGTTGAGCGATGAGTATATGAATGTGAGCCTAGTGCCCGCGTTGGGCGCCGGTGCGAGCGAGACAGAAGATACCTACATATTTGGGGAAGTGGAGATACTGAACGGGAAGGAAGATGGCGGCGGACACACGATTGTGATGGACGGTAACAGCGGCACCATATTGAGAATGATGTCCGGGCAAAAGTTGATGGACGATGGAAATTTGATATCCATCGTCGTCCCCGACAACAGCCAGGACGGCTCCAATGGACACCAAGCGGAAGACTCCAACGACGAGTCTCAAATAGAGCTACAAGTGTCGGGCGACGAAGAAACTGCGAACGCAATAATTGCGGCTGCGCATCAACAGGGTGCACTAATTAAGGTGGAAGGGTCCGACACGTATCGCGTGGAGCTCGTCAGTAGTCCCGACGACGATGATGGCGACAGTAACCAACAGGAGCAGGACGATCAACGCAAGCATGTGCAATTGATTGAATCGATTGGTGATAAGAAATTCAAATGTCTGCTGTGCCAGAAAAGAGACAAGAATCCAGAGCATGTGTCGGGAAACGCCGAGTTCATAATGTGTCACCTGCGCGTGTACCACGACGCTCGATTCTACGTCTGCCCAGTGTGCAGTATGTTTCTGTACAAGCGGTCGGATTATTCCGCCCATATAGCTCGACATGCGACATCAACGAATGGCAAAAACAAAATGTACGAATGTTCAATTTGCAACAAAAAGTTTAGTTCTCGCGCGCTGCTGTCGTCGCACTGCAACATGCACGCGGGCCATAAGCCGTACGTGTGCGACGTCTGCGGGAAAAGTTTCGCCTCAAAGTATACCCACATCGCTCACATCAAGACGCACAGGGTTCGCCCGCGTCCGTTCAAATGCAATCAATGCGCGAAGAGTTTCTTCACACAACAAAACCTCTTGTCCCACGAAAAGACTCATGTCGGAATCAAAGATTTCAAGTGTACAATATGCGACAAAGCGTTCAGCACACAGCACAACCTGGAAATGCACGGCGTCGTACATTCGGGCAAGAAGCCGTTCGTTTGCGGAGTCTGCAATAAGGGCTTCGCGAGACGAGCCGAGATCAACGACCACATGAGGACTCACACAGGCGAAAGGCCGTTCGGATGCGATATATGCGGATCGTCGTTCTCGCAGCGATCGAACCTGCTGTCGCACAAACGCGCGACGCACCTCAACGATTTCCGCTACCCCTGTGAACATTGCGAAAGGCGCTTCAAGAGGCGGAGACTGCTGGAGTACCACATAAAGACGACGCACACTGGCGAGCGTCCGCTCGTGTGCCCAATCTGCGACGCCACGTTCGTGTACCCGGAGCACTACAAGAAGCATCAGCGGATACACAGCGGCGAGAAACCCTTCAACTGTGAGGTGTGCGGCAAGTCGTTCAACTCGCGCGACAATCGCAACATGCACCGCTTCGTGCACAGCGACAAGAAGCCGTACGAGTGCGTCGTGTGCGGCGCGGGCTTCATGCGCAAGCAGCTCTTGCACCTGCACATGGAGGCATTGGGTCACATGGCCGAATCTATAGTCGTGAACCAGCCGAGACTAGTAAACTTAAAAGGCAATGAATTCGAAACAGTACATCACTTCAATGTGAATACGAACAAAAGTTCAGTTAATGCCGAGAGTGAATTGAAACCGGTGGGCGCATTGCTGGAAGCCATCTCCTCGAACGCACTCTTAACAGAGGAGTCCATGGAATCCATGAATGTGATATCAACGGATAGTGGGTTGATGAGACTCGTGCACGTGCAACTCGCCGAGGGCAACACTGGCTGGGTTGCCATTGAGCAATGA
Protein Sequence
MSQRCFICNLLIGPSPKQSTLIFEDGNSDFYKLALPSGKKLVNLICDIIDKKVDRNTAHSPFLCKKCYVQCVEYDNLSVKLSKVKSEITEKYQKTFDSHNGNNKKAVSTTSSTLDSVQIVKIQRTVKPKNVLLQESQLQPLPPNYTLEIGDVSSVPLQNETLKPSTVNLKVTVGSSVLTQSIKTSTAKTPTKKAVVDNETEENRGLPLRIEDLINKNRSPTLEPVNKFPMLSKDSLDSIFNVLTEIRNADDGKRVKRVLNVFESGEEPMQIDNQACSFAVINAKETDPLKDFVEETTSSAESKLSDEYMNVSLVPALGAGASETEDTYIFGEVEILNGKEDGGGHTIVMDGNSGTILRMMSGQKLMDDGNLISIVVPDNSQDGSNGHQAEDSNDESQIELQVSGDEETANAIIAAAHQQGALIKVEGSDTYRVELVSSPDDDDGDSNQQEQDDQRKHVQLIESIGDKKFKCLLCQKRDKNPEHVSGNAEFIMCHLRVYHDARFYVCPVCSMFLYKRSDYSAHIARHATSTNGKNKMYECSICNKKFSSRALLSSHCNMHAGHKPYVCDVCGKSFASKYTHIAHIKTHRVRPRPFKCNQCAKSFFTQQNLLSHEKTHVGIKDFKCTICDKAFSTQHNLEMHGVVHSGKKPFVCGVCNKGFARRAEINDHMRTHTGERPFGCDICGSSFSQRSNLLSHKRATHLNDFRYPCEHCERRFKRRRLLEYHIKTTHTGERPLVCPICDATFVYPEHYKKHQRIHSGEKPFNCEVCGKSFNSRDNRNMHRFVHSDKKPYECVVCGAGFMRKQLLHLHMEALGHMAESIVVNQPRLVNLKGNEFETVHHFNVNTNKSSVNAESELKPVGALLEAISSNALLTEESMESMNVISTDSGLMRLVHVQLAEGNTGWVAIEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01386958;
90% Identity
-
80% Identity
-