Sand011949.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000721.1:10228-12949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5e-05 0.0022 18.7 5.1 2 23 171 192 170 192 0.98 2 13 0.0061 0.38 11.7 4.4 1 23 195 217 195 217 0.97 3 13 1.1e-05 0.00071 20.3 0.8 1 23 223 245 223 245 0.99 4 13 0.0013 0.079 13.8 0.2 5 20 269 284 268 286 0.93 5 13 0.004 0.25 12.3 2.0 2 23 295 317 294 317 0.93 6 13 0.00078 0.048 14.5 0.6 2 23 324 346 323 346 0.93 7 13 0.0018 0.11 13.4 1.2 2 23 354 376 353 376 0.93 8 13 3.5e-05 0.0022 18.7 0.9 2 23 383 405 382 405 0.94 9 13 8.2e-06 0.00051 20.7 1.6 2 23 413 435 412 435 0.94 10 13 2.1e-05 0.0013 19.4 1.3 2 23 442 464 442 464 0.95 11 13 2.4e-05 0.0015 19.2 0.6 2 23 475 497 474 497 0.94 12 13 0.069 4.3 8.4 0.4 2 23 504 526 503 526 0.93 13 13 2.5e-05 0.0015 19.2 2.0 2 23 532 554 531 554 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTGAACCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCACGCTACATTCGGAATCTCATTTGAACCCTCGGAATGTGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGAATCTCAACGGACTTGAAGAATGCCTGTGGGAAAATTATTAAACAGGAGCCATTATTTGAAAACGATGTCCCAATTAAAAAAGAAAAAGTTTGGATTTATGCTTGCAGCGATAAAGAAGTACCATTGATTAAAGTCTACATAAAAGTTGAAAAGGAAGAGCCTCCCACTCACAACAATGAAGACAATCACTCAGATGTAAATATGGTTTTAGACGAAGTATCCAATCAAGATGGCAGAATCGAAGAGAGCCGAAACGAATTAGATGAAAACTTCAGTGAATCTGAGAACGACAGACACGAGAATAAATGCAATTTTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAAAAAGTCACATCAAGACGCACTTTAAACATCGCTGTGAAGTATGCAATAGATGTTATCAGAGCAAAGGTAGATTGCGTAATCACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGCGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGGAAACACACAAGGACGGAAAACCGCACGAGCACCGCAATAGACAAATGTTGACGCATGCTGAGTCAAAAGAGCGCGACATTTGCAAAAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACATGTCGGCTCTAAATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAACACAAACGGAGTGTAAGCAGGCACATTTCGGCTGTACATTCGGACCTTCCATCCACTCAGTGCGACATATGCAAGAAGACATTTAAATCCATGGAGACTATACGCAGCCACATTTCGGCTGAACATTTGGGCCTTAAGCCACCCATTCAGTGCGATATTTGCATGAAGACATTTAAACACAAACGGAGTGTAAGCAGGCACATTTTGGCTGTACATTCGGACCTTCCATCCACTCAGTGCGACATATGCAAGAAGACATTTAAGTCCAAGGAGACTATACGCAGCCACATGTTGGCTGAACATTTGGGCCTTAAGCCACACACTCAGTGCGATATTTGCAAAAAGACATTTAAATATAAACAGAGTTTAAGCAAGCACATGTCGGCTGTACATTTGGATCTTCCACCCCCTCAGTGCAACATTTGCAGGAAGACATTTAAATCCAAGGACACTATACGCAAGCACATGTTGGCTGTACATTTGGGCTTTAAACCAACGCTCATTACCACTGAGTGCGAAATTTGCAAAAAGACATTTAAATACAAGCAAAGTCTACGCGGCCACATGTTGGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCATGAAGACATTTCAATCCAAGTCTATTATACGCAGGCACATGTTGGCTGTACATTTGGGCTTTAAGTTAAAGTGTGACATATGCAAGGAGACATTTAAATACAAATACAGTTTAAGCAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCGAACACGCAATAAAAGAAAAGTTATTTAA
- Protein Sequence
- MAATLNQTPLCRCCHKYGVFKSLFSDYIYNENEVENYSQMLHATFGISFEPSECDKIYTICDECIEKLRISTDLKNACGKIIKQEPLFENDVPIKKEKVWIYACSDKEVPLIKVYIKVEKEEPPTHNNEDNHSDVNMVLDEVSNQDGRIEESRNELDENFSESENDRHENKCNFCNRTFRFKKYLKSHIKTHFKHRCEVCNRCYQSKGRLRNHEMVHKDERKFKCSICNNAFTLSRSLKAHMETHKDGKPHEHRNRQMLTHAESKERDICKKTFKYKQSLSRHMSALNSDLPPTQCDICMKTFKHKRSVSRHISAVHSDLPSTQCDICKKTFKSMETIRSHISAEHLGLKPPIQCDICMKTFKHKRSVSRHILAVHSDLPSTQCDICKKTFKSKETIRSHMLAEHLGLKPHTQCDICKKTFKYKQSLSKHMSAVHLDLPPPQCNICRKTFKSKDTIRKHMLAVHLGFKPTLITTECEICKKTFKYKQSLRGHMLAVHSDLPPTQCDICMKTFQSKSIIRRHMLAVHLGFKLKCDICKETFKYKYSLSRHKSTVHLGLKRTRNKRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -