Sand006897.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000377.1:113238-122293[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1e-06 0.00019 22.0 3.6 2 23 299 320 298 320 0.98 2 12 0.00082 0.051 14.4 0.9 1 23 323 345 323 345 0.97 3 12 1.2e-05 0.00075 20.2 1.4 1 23 351 373 351 373 0.99 4 12 0.07 4.4 8.3 0.1 5 19 380 394 378 399 0.91 5 12 0.0013 0.08 13.8 0.2 1 23 405 427 405 427 0.97 6 12 2.6e-06 0.00016 22.3 1.4 1 23 433 455 433 455 0.98 7 12 3.2e-06 0.0002 22.0 0.9 2 23 488 510 487 510 0.93 8 12 3.2e-06 0.0002 22.0 3.3 1 23 515 538 515 538 0.95 9 12 0.0059 0.37 11.7 1.9 2 23 546 568 545 568 0.90 10 12 3.8e-05 0.0024 18.6 1.9 2 23 577 599 576 599 0.96 11 12 2.7e-05 0.0017 19.1 2.0 2 23 608 630 607 630 0.93 12 12 1.6 97 4.1 0.8 2 11 637 646 636 646 0.92
Sequence Information
- Coding Sequence
- ATGGTAAGAGGTATATGCACATCATGGAGACAACCTTTTGCATTTTACTTTTGTGAGGGTACAATGCCAGCTGCTCAATTAAAAAAAATACTCAATGATGTTGTTGACGCCGTAGTTCATATAGGTCTAGAGCCCATAGCATTTATTTGTGACCAAGGCATGACATTTCAGTCTACTCTTAAATCATTACAAGAAGAAACTAGAAGGTTACAAGTGCAAAACAATTTAAAATATGATGGTACCGTCTCGCTACAGGGTTGCAACATTAGTGTTATATATGATCCTCCACATCTCCTGAAAGGGATACGCAATAATATGCTGACCAAGGATCTTCTTTATGAAGTCCGAATTGCTAAATGGCAAGATATAATTGATATATATAACTTTGATTGTAAAATTGGTCAGATTAGAATGCTTCCAAAATTAACGGATGAACACGTAATTCCTGATAAAATTAGGAAAATGAAAGTGAGCTACTGCTCAAAAGTTCTAAGTGAACGAGTGGCGGCTACTTTAAGATACACAGCACAATTCACACAACATCAAGATGGAAGTGTATTAAGTAGCACCTATAAAAATACTGCAGATGCTGTAGAATTTTTCGATAAACTTTTTGACTCTTGCAATGGGTCACGAACTGGAAATGCTGCGGGAAAAATTCGAGGGGCTGTTAAAGAAAGCAGCCAACATTTGGCGTTTTGGAAGGAAGTACCATTGATTAAAGTCGACGTAAAAGTTGAAAAGGAAGAGCTTGTCACTCCCAGCGATGAAGACAATCACTCAGATGTAAATGTGGTTTTAGACGAAGTATCCAATCAAGATGGCAGAATTGAAGAGAGCCGAAGCGAATTAGATGAAAACTTCAGTGAATCTGAGAACGACAGACACGAGAATAAATGCAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAGAAAGTCACATGAAGACGCACTTTAGACATCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCTTAGACACGAAATGGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGAAAAACCGCAGGAGTGCGGCCGGAAATTTAATGTCAAGAAAAGCTTATTGAGGCATCCTCAAAACATGCACATGGGTGTAAACAAGTACAGTTGCCAGTATTGTGATAAAGGATTTATGATGAAAGGTAGATTGGTTGCACATGAAATGATACACACGGGTGTAAAACTTTATGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAATATGCTTTGATAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATTGTAACCTGCGTGAAAATGGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGAGATAATAGAGTGCGACATTTGCAAGAAGACCTTTAAATACAGACAGAGTTTAAAAAGGCACATGTCGGCTGTACATTTGGGCTTTGAGTTTAAGTGCAACAAATGCAAGAAGACATTTAAATACAAGCAAGGTCTACGCAAGCACATGTTGGCTGAACATTTGGGCCTTAAGCCACCCACTCAGTGCGACATATGCAAGAAGACATTTAAATCCAAGGATATTATATGCCAGCACATGTTGGCTCTACATTTGGGCTTCAAGCCAACGCACACTCAGTGCGACCTTTGCAAGAAAATATTTAAAAACAAGGATCATATACGCCAGCACATGTTGGTTGCACATTTGGGCTTCAAGCCAACGCCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATACAAACACGGTTTAAGCAGGCACATTTCGGCTGTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCAAGGAGACATTTAAATGCAACATTATTTAA
- Protein Sequence
- MVRGICTSWRQPFAFYFCEGTMPAAQLKKILNDVVDAVVHIGLEPIAFICDQGMTFQSTLKSLQEETRRLQVQNNLKYDGTVSLQGCNISVIYDPPHLLKGIRNNMLTKDLLYEVRIAKWQDIIDIYNFDCKIGQIRMLPKLTDEHVIPDKIRKMKVSYCSKVLSERVAATLRYTAQFTQHQDGSVLSSTYKNTADAVEFFDKLFDSCNGSRTGNAAGKIRGAVKESSQHLAFWKEVPLIKVDVKVEKEELVTPSDEDNHSDVNVVLDEVSNQDGRIEESRSELDENFSESENDRHENKCNICNRTFRFKKYLESHMKTHFRHRCEVCNRDYQSKGELLRHEMVHKDERKFKCSICNNGFTLSRSLKAHMKTHKDEKPQECGRKFNVKKSLLRHPQNMHMGVNKYSCQYCDKGFMMKGRLVAHEMIHTGVKLYECEKCNKSFRSKYALISHNKVHEKHEPNNCNLRENGFKRRENFNRQMLTHAEIIECDICKKTFKYRQSLKRHMSAVHLGFEFKCNKCKKTFKYKQGLRKHMLAEHLGLKPPTQCDICKKTFKSKDIICQHMLALHLGFKPTHTQCDLCKKIFKNKDHIRQHMLVAHLGFKPTPTQCDICKKTFKYKHGLSRHISAVHSDLPPTQCNICKETFKCNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -