Sand006887.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000377.1:18748-21181[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2e-05 0.002 18.8 5.1 2 23 170 191 169 191 0.98 2 12 0.002 0.12 13.2 0.8 1 23 194 216 194 216 0.96 3 12 2.1e-05 0.0013 19.4 0.8 1 23 222 244 222 244 0.99 4 12 0.0012 0.072 13.9 0.2 5 20 268 283 267 285 0.93 5 12 5.3e-05 0.0033 18.2 0.8 2 23 294 316 293 316 0.94 6 12 2.4e-05 0.0015 19.2 0.9 2 23 323 345 322 345 0.94 7 12 7.6e-07 4.7e-05 24.0 1.3 2 23 352 374 351 374 0.94 8 12 4e-06 0.00025 21.7 2.8 2 23 385 407 384 407 0.95 9 12 4e-06 0.00025 21.7 2.8 2 23 418 440 417 440 0.95 10 12 1.1e-05 0.00068 20.3 1.3 2 23 448 470 447 470 0.94 11 12 0.18 11 7.0 1.7 2 13 479 490 479 490 0.91 12 12 0.0004 0.025 15.4 0.9 1 23 489 512 489 512 0.94
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCAACGAAAGTGAGGTTGAAAATTATTCTCAGATGTTGCACGCTACATTCGGAATCTCATTTGTACCCTCGGAACGTGACAAAATATATACAATATGCGACGAGTGTATTGAAAAACTACGAATCTCAACGGACTTGAAGATTGCCTGTGGGAAAATTATTAAACAGGAGCCGTTAATTGAAAACGATGTCCCAATTAAAATAGAAAAATGTTGGAGTTATTCTTGCAGCGATAAAGAAGTACCGTTGATTAAAGTCTACATAAAAGTTGAAAAGGAAGAGCCTCCCACTCACAACAATAAAGACAATCACTCAGATGTAAATATGGTTTTAGACGAAGAATCCAATCAAGATGGCAGAATTGAAGAGAGCCGAAACGAATTAGATGAAAACTTCAGTGAATCTAAGAACGACAGACACGAGAATAAATGCAATTTTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAAAAAGTCACATCAAGACACACTTCAAACATCGCTGTGAAGTATGCAAAAGAGATTATCAGAGCAAAGGTGAATTGCTTAGGCACGAAATTGTGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGGAAACACACAAGGACGGAAAACCGCACGAGCACCGCAATAGACAAATGTTGACGCATGCTGAGTCAAAAGAGCGCGACATTTGCAAAAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACATGTCGGCTCTAAATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAGGAAGACATTTAAATCCAAGGAGACTATACGCCAACACATGTTGGCTATACATTCGGACCTTCCACCCACTCAGTGTGACATTTGCAAGAAGACATTTAAATCCAAGGAGACTATACGCCAACACATGTTGGCTATACATTCGGACCTTCCACGCACTCAGTGCGACATTTGCAGGAAGACATTTAAATCCAAATATAATTTAAGCAAGCACATGTTGGCTGTACATTTGGGCTTTAAACCAACGCTCATTACCACTGAGTGCGAAATTTGCAGGAAGACATTTAAATACAAACATAATTTAAGCAAGCACATGTCTGTTGTACATTTGGGCTTTAAACCAAAGCTCATTACCACTGAGTGCGAAATTTGCAGGAAGACATTTAAATACAAACATAATTTAAGCAAGCACATGTCTGTTGTACATTTGGGCCTTTTGCCACCAACTCAGTGCGAAATTTGCAAGAAGACATTTAAATACAAGCGAGGTCTTCGCAGCCACATGTCGGCTGAACATTTCGGCCTTAAGCCAACGCCCGCTGAGTGCTCAATTTGCAAGAAGACATTTAAACACAAATGCGACATATGCAAGAAGACATTAAAATCCAAGGAGACTATACGCAGCCACATGTCGGCTGAACATTTGGGCCTTAAGCCACCCACTCAGTGCGATATTTGCACTGATATAGTTTAA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYINESEVENYSQMLHATFGISFVPSERDKIYTICDECIEKLRISTDLKIACGKIIKQEPLIENDVPIKIEKCWSYSCSDKEVPLIKVYIKVEKEEPPTHNNKDNHSDVNMVLDEESNQDGRIEESRNELDENFSESKNDRHENKCNFCNRTFRFKKYLKSHIKTHFKHRCEVCKRDYQSKGELLRHEIVHKDERKFKCSICNNGFTLSRSLKAHMETHKDGKPHEHRNRQMLTHAESKERDICKKTFKYKQSLSRHMSALNSDLPPTQCDICRKTFKSKETIRQHMLAIHSDLPPTQCDICKKTFKSKETIRQHMLAIHSDLPRTQCDICRKTFKSKYNLSKHMLAVHLGFKPTLITTECEICRKTFKYKHNLSKHMSVVHLGFKPKLITTECEICRKTFKYKHNLSKHMSVVHLGLLPPTQCEICKKTFKYKRGLRSHMSAEHFGLKPTPAECSICKKTFKHKCDICKKTLKSKETIRSHMSAEHLGLKPPTQCDICTDIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -