Sand006902.1
Basic Information
- Insect
- Synanthedon andrenaeformis
- Gene Symbol
- -
- Assembly
- GCA_936447275.2
- Location
- CAKZFQ020000377.1:129156-132033[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2e-06 0.00013 22.6 4.6 2 23 171 192 170 192 0.98 2 12 0.0028 0.17 12.7 2.6 1 23 195 217 195 217 0.95 3 12 9.7e-06 0.0006 20.5 1.4 1 23 223 245 223 245 0.99 4 12 0.002 0.13 13.2 0.7 5 23 252 271 250 271 0.93 5 12 0.0031 0.19 12.6 0.1 1 23 277 299 277 299 0.97 6 12 2.1e-06 0.00013 22.6 1.4 1 23 305 327 305 327 0.98 7 12 2.5e-05 0.0015 19.2 1.5 2 23 360 382 359 382 0.93 8 12 9.2e-06 0.00057 20.6 1.0 2 23 389 411 388 411 0.94 9 12 7.6e-05 0.0047 17.7 1.1 2 23 418 440 418 440 0.95 10 12 7.5e-06 0.00047 20.8 1.7 2 23 447 469 446 469 0.93 11 12 3e-05 0.0018 19.0 2.0 2 23 476 498 476 498 0.97 12 12 4.5e-06 0.00028 21.5 1.5 2 23 506 528 505 528 0.94
Sequence Information
- Coding Sequence
- ATGGCTGCAACATTAAAGCAAACACCGTTATGCAGATGTTGTCACAAGTATGGTGTATTCAAGAGTCTATTTTCCGACTATATCTACAACGAGAATGAGGTTGAAAATTATTCTCAGATGTTGCACGCTACATTCAGAATCTCATTTGAACCCTCGGAACGTGACAAAATATATACAATATGCGATGAGTGTATTGAAAAACTACGAATCTCAAAGGATTTGAAGATTGCCTGTGGAAAAATTATTAAACAGGAGCCGTCAATTGAAAATGATATCCCAATTAAAATAGAAAAATGTTGGAGTTATGCTTGCAGCGATAATGAAGTACCGTTGATTAAAGTCGACGTAAAAGTTGAAAAGGAAGAGCTTGTCGCTCCCAGCGATGAAGACAATCACTCAGATGTAAATGTGGGTTTAGACGAAGTATCCAATCAAGATGGCAGAATTGAAGAGAGCCGAAGCGAATTAGATGAAAACTTAATTGAATCTGGGAACGACAGATACGAGAATAAATGCAATATTTGCAATAGAACTTTTAGATTCAAAAAGTACCTAAAAAATCACATGAAGACGCACTTTAGACATCGCTGTGAAGTATGCAATAGATGTTATCAGAGCAAAGGTGGATTGCTTAGGCACGAAATATTGCATAAGGATGAGAGAAAGTTTAAGTGCTCGATATGTAATAATGGGTTTACGCTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGATGAAACACCGCAGGAGTGCGGCCGGAAATTCAAAGTCAAGGAAAGCTTATTGAGGCATCATCAAAACATGCACATAGGTGGAAACAAGTATAGTTGCCAGTATTGTGATAAAGGATTTATGATTAAAGGTAGATTGGTTGCACATGAAATGATACACACGGGTGTAAAACTGTATGAGTGCGAAAAATGCAATAAATCGTTTAGAAGCAAATATGCTTTGATAAGTCATAATAAAGTGCATGAGAAACATGAGCCTAACAATTGTAACCTGCGTGAAAATGGATTCAAAAGAAGAGAAAATTTCAATAGACAAATGTTGACGCATGCTGAGATAATAGAGTGCGACATTTGTAAGAAGATATTTAAATACAAACATTATTTAAGCAAGCACATGTCGGCTATACATTCGGACCTTCCACCCACTCAATGCGACATTTGCAAGAAGACATTTAAATCCAAGGAGACTATACGCAGGCACATGTTAGCTGTACATTCGGACCTTCCACCCGCTCAGTGCGACATTTGCAGGAAGACATTTCAATCCAAGTCTACTATTCGCAGGCACATGTTGGCTGAACATTTGGGCCTTAAGCCAACTCAGTGCGATATTTGCAAAAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACATGTCGGATGTACATTCGGACCTTCCACCCGCTCAGTGCGACATTTGCAGGAAGACATTTCAATCCAAGTCTACTATTCGCAGGCACATGTCGACTGTACATTTGGGCCTTAAGCCACCCACTCAGTGCGATATTTGCAAAAAGACATTTAAATATAAACAGAGTTTAAGCAGGCACATGTTGGCTCTACATTCGGACCTTCTACACACTCAGTGCGACATTTAA
- Protein Sequence
- MAATLKQTPLCRCCHKYGVFKSLFSDYIYNENEVENYSQMLHATFRISFEPSERDKIYTICDECIEKLRISKDLKIACGKIIKQEPSIENDIPIKIEKCWSYACSDNEVPLIKVDVKVEKEELVAPSDEDNHSDVNVGLDEVSNQDGRIEESRSELDENLIESGNDRYENKCNICNRTFRFKKYLKNHMKTHFRHRCEVCNRCYQSKGGLLRHEILHKDERKFKCSICNNGFTLSRSLKAHMKTHKDETPQECGRKFKVKESLLRHHQNMHIGGNKYSCQYCDKGFMIKGRLVAHEMIHTGVKLYECEKCNKSFRSKYALISHNKVHEKHEPNNCNLRENGFKRRENFNRQMLTHAEIIECDICKKIFKYKHYLSKHMSAIHSDLPPTQCDICKKTFKSKETIRRHMLAVHSDLPPAQCDICRKTFQSKSTIRRHMLAEHLGLKPTQCDICKKTFKYKQSLSRHMSDVHSDLPPAQCDICRKTFQSKSTIRRHMSTVHLGLKPPTQCDICKKTFKYKQSLSRHMLALHSDLLHTQCDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01386030;
- 90% Identity
- -
- 80% Identity
- -