Basic Information

Insect: Synanthedon andrenaeformis
Gene Symbol: -
Assembly: GCA_936447275.2
Location: CAKZFQ020000643.1:12219-16198[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.8e-05 0.0036 18.1 2.5 2 23 206 227 205 227 0.98

2 15 0.056 3.5 8.7 1.5 1 23 230 253 230 253 0.96

3 15 0.00033 0.02 15.7 2.6 2 23 285 306 285 306 0.97

4 15 0.00049 0.03 15.1 0.6 2 23 313 334 312 334 0.97

5 15 0.0034 0.21 12.5 3.3 1 23 341 364 341 364 0.91

6 15 6.8e-06 0.00042 21.0 1.5 1 23 370 392 370 392 0.98

7 15 4.7e-05 0.0029 18.3 2.7 1 23 398 420 398 420 0.95

8 15 0.0023 0.14 13.0 0.5 1 23 426 448 426 448 0.97

9 15 1.5e-07 9.5e-06 26.2 0.5 2 23 463 484 462 484 0.97

10 15 0.00011 0.0068 17.2 2.5 1 23 490 513 490 513 0.95

11 15 2.2e-05 0.0014 19.4 0.7 2 23 526 548 525 548 0.96

12 15 1.5e-06 9.5e-05 23.0 2.9 2 23 557 579 556 579 0.96

13 15 0.0001 0.0063 17.3 6.0 2 23 592 614 592 614 0.96

14 15 9e-05 0.0056 17.4 6.1 2 23 625 647 624 647 0.96

15 15 1.6e-07 9.8e-06 26.1 1.0 2 23 661 683 661 683 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.8e-05	0.0036	18.1	2.5	2	23	206	227	205	227	0.98
2	15	0.056	3.5	8.7	1.5	1	23	230	253	230	253	0.96
3	15	0.00033	0.02	15.7	2.6	2	23	285	306	285	306	0.97
4	15	0.00049	0.03	15.1	0.6	2	23	313	334	312	334	0.97
5	15	0.0034	0.21	12.5	3.3	1	23	341	364	341	364	0.91
6	15	6.8e-06	0.00042	21.0	1.5	1	23	370	392	370	392	0.98
7	15	4.7e-05	0.0029	18.3	2.7	1	23	398	420	398	420	0.95
8	15	0.0023	0.14	13.0	0.5	1	23	426	448	426	448	0.97
9	15	1.5e-07	9.5e-06	26.2	0.5	2	23	463	484	462	484	0.97
10	15	0.00011	0.0068	17.2	2.5	1	23	490	513	490	513	0.95
11	15	2.2e-05	0.0014	19.4	0.7	2	23	526	548	525	548	0.96
12	15	1.5e-06	9.5e-05	23.0	2.9	2	23	557	579	556	579	0.96
13	15	0.0001	0.0063	17.3	6.0	2	23	592	614	592	614	0.96
14	15	9e-05	0.0056	17.4	6.1	2	23	625	647	624	647	0.96
15	15	1.6e-07	9.8e-06	26.1	1.0	2	23	661	683	661	683	0.96

Sequence Information

Coding Sequence: ATGGCTGAAACATTGAATCCAACCCAGTTTTGTAGATGTTGTCATAAAAATGGTGATTTCAAGTGTGTATTTTCCGACTCCATTTACGAGAATGAGATTGAAAATTATTCGCAGATGTTGTACGATACATTCGGAATCTCATTTGAGCCCTCGGAATATTACAAAATATATACAATATGTGAAGAGTGTATTGAAATACTACGTATATCGATGGAATTCAAAAATGGTGTCCTTGCCAGTGCAAAAAATATTAAACAAGAGCCATCAATTGAAAACTATGTTGCAGTTAAAATAGAAGAATCTTGGAGTTACGCTTGCAGCGATAAAGAAGACATCGCAGTTAAAATAGAAGAGACCACCAACGATGAAGACGATGAAACAGTTATAAATACGGTTTTAAATGAAGAGACCGCAGAAGATATCAAAGTTGAAGACAATGAAAAAGAATCAGTTAAAATAGAAGACACTGCAGACTATGAAGAAAAGGGTATATATGAGGTTTTAAATGAAGAGTCCAATGAAAATATCAAAGTTGAAGAGAGTGAAATGGATATAGATGAAGCCTTCGTCGAATCTAAAAACAGTTTAAGAAACACATGCGACATAAAAGAGAACAAATGCAATGTTTGCAATGAAACTTTTAAATTCAAAAGGCAACTAGAAATTCACAAAAGATCTCACGACGGCTATAAATGTCCAATATGTCAACAAATACTGTCCAATCAGAGAGATCACTCGGAACACATTAAGTCGAAGCACATTGTCGACGGCAAATATTGCTGTATCGTTTGCGATGCTACATTTTTGGAAGTGAAAGAGGTCCAGTGTCACATAAGGACGCACTTGAGTAACAGTTGTGAAGTGTGCCATAAGGAATATATGAGGAAAAGTGATTTGCGCAGTCACGAAAAGATGCACATAGATGGGAAAAAGTTAAAATGCACAATATGTGATAGCCTTTTCACACTGAGCAGAAGTTTGAAGGCTCACATGGAAACACACAAGGAGGATAGAACGCCGTACGACTGCCTAGAGTGCGAAAGGAAATTTACATATAAGAACAACTTAGTGAGGCATTGTCGAAATGTGCACATGGATGTAAAAAAGTACAGTTGCCAGTATTGCGATAAAAGTACTAAGACGAAAGATAGTTTGGTCATACATGAAAGGAGACATATGGGCGTAaaaccgtatgtctgcgataaatgtgatagagcgttttgtagcagaagagatttaacgcgtcacaatacagtgcatttgaaaagtaaaccttacatttgtaacgtgtgtgagaaaGCATACAAAACAAAAGAAATTTTAAGAATACACAAATTGAAGCATACTGAGATAAAACTTGGACACGTGTTGAGGCATACTGGGATAAAATGCAGTGTCTGTAGCAAAGCTTTTGTACGTAAAGAAAATCTTACTAGACACATGATGATCCACAATGACCAAAGACCGTACAAATGCGACATTTGCAAAAAGTCATTTAAGTTCAAGAATCATATAAGCGAACACATGTTGGCTGTACATTTGGGCCTTAAGCCAAGAATCAAAGCAAGTGTCACAGAATGCGACGTTTGCAAGAAGAAATTTCGATCGAAAGCGAATATACGCCAGCACATTTTGACTGTACATTTGGAATTTCAATCAACGCCCATTCAGTGCAAAATTTGCAAGAAGACATTTAAATACAAAAAGAATTTAAACAGGCACAGGTTGTCTGTACATTTGGGTTATAAGCGAACACGCACAGAAAGTGTCGCAGAATGTGACATTTGCAAGAAGACATTTAAACACAAACAAAGTTTACACAGGCACAGGTTGACTGTACATTTGGGCTTTAAGCCACCGCGCACAGAATGTGTCTGCGACATTTGCAGGAAAACATTTAAACACAGACAGAGCTTGAGGAGGCACAGGTTGACTGTACATTTGGGTGTTAAGCTAACGCGTAAAGAAAGTGTCGCGGCAGAGTGCGACATATGCAAGAAAACATTTAAACGCAAACAGAATTTAGAGAGGCACATGTTGGTTGTACATATGGGCTTTTTTGACAATACGTATTTGGCCAAAATATGA
Protein Sequence: MAETLNPTQFCRCCHKNGDFKCVFSDSIYENEIENYSQMLYDTFGISFEPSEYYKIYTICEECIEILRISMEFKNGVLASAKNIKQEPSIENYVAVKIEESWSYACSDKEDIAVKIEETTNDEDDETVINTVLNEETAEDIKVEDNEKESVKIEDTADYEEKGIYEVLNEESNENIKVEESEMDIDEAFVESKNSLRNTCDIKENKCNVCNETFKFKRQLEIHKRSHDGYKCPICQQILSNQRDHSEHIKSKHIVDGKYCCIVCDATFLEVKEVQCHIRTHLSNSCEVCHKEYMRKSDLRSHEKMHIDGKKLKCTICDSLFTLSRSLKAHMETHKEDRTPYDCLECERKFTYKNNLVRHCRNVHMDVKKYSCQYCDKSTKTKDSLVIHERRHMGVKPYVCDKCDRAFCSRRDLTRHNTVHLKSKPYICNVCEKAYKTKEILRIHKLKHTEIKLGHVLRHTGIKCSVCSKAFVRKENLTRHMMIHNDQRPYKCDICKKSFKFKNHISEHMLAVHLGLKPRIKASVTECDVCKKKFRSKANIRQHILTVHLEFQSTPIQCKICKKTFKYKKNLNRHRLSVHLGYKRTRTESVAECDICKKTFKHKQSLHRHRLTVHLGFKPPRTECVCDICRKTFKHRQSLRRHRLTVHLGVKLTRKESVAAECDICKKTFKRKQNLERHMLVVHMGFFDNTYLAKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01387805;
90% Identity: -
80% Identity: -